RNA–Protein interactions for RNA: ENST00000489503.5

SMARCD3-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 378 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-213ENST00000489503 EN1Q05925 392 aaPredicted RBP16.65■□□□□ 0.26
SMARCD3-213ENST00000489503 DDX10Q13206 875 aaKnown RBP16.65■□□□□ 0.26
SMARCD3-213ENST00000489503 ACSBG1Q96GR2 724 aa16.65■□□□□ 0.26
SMARCD3-213ENST00000489503 COL3A1P02461 1466 aaPredicted RBP16.65■□□□□ 0.26
SMARCD3-213ENST00000489503 BAG6P46379 1132 aa16.64■□□□□ 0.25
SMARCD3-213ENST00000489503 AEBP1Q8IUX7 1158 aa16.64■□□□□ 0.25
SMARCD3-213ENST00000489503 ZCRB1Q8TBF4 217 aaKnown RBP16.64■□□□□ 0.25
SMARCD3-213ENST00000489503 IGSF1Q8N6C5 1336 aa16.64■□□□□ 0.25
SMARCD3-213ENST00000489503 BCL9O00512 1426 aa16.63■□□□□ 0.25
SMARCD3-213ENST00000489503 APBA3O96018 575 aa16.63■□□□□ 0.25
SMARCD3-213ENST00000489503 KCNQ2O43526 872 aa16.62■□□□□ 0.25
SMARCD3-213ENST00000489503 RREB1Q92766 1687 aa16.62■□□□□ 0.25
SMARCD3-213ENST00000489503 TOGARAM1Q9Y4F4 1720 aa16.62■□□□□ 0.25
SMARCD3-213ENST00000489503 KAT6BQ8WYB5 2073 aa16.61■□□□□ 0.25
SMARCD3-213ENST00000489503 BTAF1O14981 1849 aa16.61■□□□□ 0.25
SMARCD3-213ENST00000489503 IL13P35225 146 aa16.61■□□□□ 0.25
SMARCD3-213ENST00000489503 EZH2Q15910 746 aaKnown RBP16.61■□□□□ 0.25
SMARCD3-213ENST00000489503 NUP188Q5SRE5 1749 aa16.61■□□□□ 0.25
SMARCD3-213ENST00000489503 PPP2R1AP30153 589 aa16.59■□□□□ 0.25
SMARCD3-213ENST00000489503 PCDH11XQ9BZA7 1347 aa16.59■□□□□ 0.25
SMARCD3-213ENST00000489503 PCDH11YQ9BZA8 1340 aa16.59■□□□□ 0.25
SMARCD3-213ENST00000489503 CYP27B1O15528 508 aa16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 SULT6B1Q6IMI4 303 aa16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 CAMKK2Q96RR4 588 aa16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 BCL11BQ9C0K0 894 aaPredicted RBP16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 PARD3Q8TEW0 1356 aa16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 RGPD3A6NKT7 1758 aaPredicted RBP16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 RGPD4Q7Z3J3 1758 aa16.58■□□□□ 0.24
SMARCD3-213ENST00000489503 DIAPH1O60610 1272 aaKnown RBP16.57■□□□□ 0.24
SMARCD3-213ENST00000489503 KDRP35968 1356 aa16.56■□□□□ 0.24
SMARCD3-213ENST00000489503 HMOX1P09601 288 aa16.56■□□□□ 0.24
SMARCD3-213ENST00000489503 SYTL4Q96C24 671 aaPredicted RBP16.56■□□□□ 0.24
SMARCD3-213ENST00000489503 U2SURPO15042 1029 aaKnown RBP16.54■□□□□ 0.24
SMARCD3-213ENST00000489503 PRIM1P49642 420 aaKnown RBP16.54■□□□□ 0.24
SMARCD3-213ENST00000489503 SPG7Q9UQ90 795 aa16.54■□□□□ 0.24
SMARCD3-213ENST00000489503 ITGB4P16144 1822 aa16.54■□□□□ 0.24
SMARCD3-213ENST00000489503 PSDA5PKW4 1024 aaPredicted RBP16.52■□□□□ 0.24
SMARCD3-213ENST00000489503 PHKG2P15735 406 aa16.51■□□□□ 0.23
SMARCD3-213ENST00000489503 ZNF530Q6P9A1 599 aaPredicted RBP16.51■□□□□ 0.23
SMARCD3-213ENST00000489503 CFAP53Q96M91 514 aa16.51■□□□□ 0.23
SMARCD3-213ENST00000489503 ZNF316A6NFI3 1004 aaPredicted RBP16.5■□□□□ 0.23
SMARCD3-213ENST00000489503 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.5■□□□□ 0.23
SMARCD3-213ENST00000489503 KDM6AO15550 1401 aaPredicted RBP16.5■□□□□ 0.23
SMARCD3-213ENST00000489503 PLSCR1O15162 318 aa16.49■□□□□ 0.23
SMARCD3-213ENST00000489503 PLEKHO1Q53GL0 409 aaPredicted RBP16.49■□□□□ 0.23
SMARCD3-213ENST00000489503 IFNL2Q8IZJ0 200 aa16.49■□□□□ 0.23
SMARCD3-213ENST00000489503 PROM2Q8N271 834 aa16.49■□□□□ 0.23
SMARCD3-213ENST00000489503 PLEKHG2Q9H7P9 1386 aa16.49■□□□□ 0.23
SMARCD3-213ENST00000489503 LY75O60449 1722 aa16.48■□□□□ 0.23
SMARCD3-213ENST00000489503 TXNRD1Q16881 649 aa16.48■□□□□ 0.23
SMARCD3-213ENST00000489503 ANO8Q9HCE9 1232 aaPredicted RBP16.48■□□□□ 0.23
SMARCD3-213ENST00000489503 PAPPAQ13219 1627 aa16.48■□□□□ 0.23
SMARCD3-213ENST00000489503 R3HDM1Q15032 1099 aaKnown RBP16.47■□□□□ 0.23
SMARCD3-213ENST00000489503 NKX1-1Q15270 411 aaPredicted RBP16.47■□□□□ 0.23
SMARCD3-213ENST00000489503 MPRIPQ6WCQ1 1025 aa16.47■□□□□ 0.23
SMARCD3-213ENST00000489503 VIRMAQ69YN4 1812 aaKnown RBP16.47■□□□□ 0.23
SMARCD3-213ENST00000489503 KCNQ4P56696 695 aa16.46■□□□□ 0.23
SMARCD3-213ENST00000489503 RALBP1Q15311 655 aa16.46■□□□□ 0.23
SMARCD3-213ENST00000489503 AMOTQ4VCS5 1084 aa16.46■□□□□ 0.23
SMARCD3-213ENST00000489503 U2AF1L5P0DN76 240 aaPredicted RBP16.45■□□□□ 0.22
SMARCD3-213ENST00000489503 U2AF1Q01081 240 aaKnown RBP eCLIP16.45■□□□□ 0.22
SMARCD3-213ENST00000489503 SCN11AQ9UI33 1791 aa16.45■□□□□ 0.22
SMARCD3-213ENST00000489503 PRKAR2BP31323 418 aa16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 MTHFSDQ2M296 383 aaKnown RBP16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 C1orf141Q5JVX7 400 aa16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 PIGBQ92521 554 aa16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 RSPH6AQ9H0K4 717 aa16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 MYBBP1AQ9BQG0 1328 aaKnown RBP16.44■□□□□ 0.22
SMARCD3-213ENST00000489503 PALLDQ8WX93 1383 aa16.43■□□□□ 0.22
SMARCD3-213ENST00000489503 LRRC4BQ9NT99 713 aa16.43■□□□□ 0.22
SMARCD3-213ENST00000489503 NUDCQ9Y266 331 aa16.43■□□□□ 0.22
SMARCD3-213ENST00000489503 PRKRIP1Q9H875 184 aaPredicted RBP16.42■□□□□ 0.22
SMARCD3-213ENST00000489503 TMOD3Q9NYL9 352 aa16.42■□□□□ 0.22
SMARCD3-213ENST00000489503 ADAMTS7Q9UKP4 1686 aa16.41■□□□□ 0.22
SMARCD3-213ENST00000489503 TUBGCP6Q96RT7 1819 aa16.41■□□□□ 0.22
SMARCD3-213ENST00000489503 DCAF5Q96JK2 942 aa16.41■□□□□ 0.22
SMARCD3-213ENST00000489503 PHACTR3Q96KR7 559 aa16.41■□□□□ 0.22
SMARCD3-213ENST00000489503 C5P01031 1676 aa16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 HSP90AB1P08238 724 aaKnown RBP16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 ZNF827Q17R98 1081 aa16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 AKAP4Q5JQC9 854 aa16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 NBPF14Q5TI25 921 aa16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 CCNL1Q9UK58 526 aaPredicted RBP16.4■□□□□ 0.22
SMARCD3-213ENST00000489503 CASZ1Q86V15 1759 aa16.39■□□□□ 0.21
SMARCD3-213ENST00000489503 LGR6Q9HBX8 967 aa16.39■□□□□ 0.21
SMARCD3-213ENST00000489503 ASAP1Q9ULH1 1129 aa16.39■□□□□ 0.21
SMARCD3-213ENST00000489503 TAF1LQ8IZX4 1826 aa16.39■□□□□ 0.21
SMARCD3-213ENST00000489503 MRC1P22897 1456 aa16.39■□□□□ 0.21
SMARCD3-213ENST00000489503 CABP4P57796 275 aa16.38■□□□□ 0.21
SMARCD3-213ENST00000489503 PDGFDQ9GZP0 370 aaPredicted RBP16.38■□□□□ 0.21
SMARCD3-213ENST00000489503 STK32BQ9NY57 414 aa16.38■□□□□ 0.21
SMARCD3-213ENST00000489503 MAP3K5Q99683 1374 aa16.38■□□□□ 0.21
SMARCD3-213ENST00000489503 ERVV-2B6SEH9 535 aa16.37■□□□□ 0.21
SMARCD3-213ENST00000489503 ATG3Q9NT62 314 aa16.37■□□□□ 0.21
SMARCD3-213ENST00000489503 RNMTO43148 476 aaKnown RBP16.36■□□□□ 0.21
SMARCD3-213ENST00000489503 SLC15A2Q16348 729 aa16.36■□□□□ 0.21
SMARCD3-213ENST00000489503 SLC27A3Q5K4L6 730 aa16.36■□□□□ 0.21
SMARCD3-213ENST00000489503 GAS2L2Q8NHY3 880 aa16.36■□□□□ 0.21
SMARCD3-213ENST00000489503 FCHSD2O94868 740 aa16.35■□□□□ 0.21
SMARCD3-213ENST00000489503 NFATC2IPQ8NCF5 419 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms