RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 NUTM2EB1AL46 878 aaPredicted RBP13□□□□□ -0.33
USP11-211ENST00000489111 HTATSF1O43719 755 aaKnown RBP13□□□□□ -0.33
USP11-211ENST00000489111 ZNF530Q6P9A1 599 aaPredicted RBP13□□□□□ -0.33
USP11-211ENST00000489111 NUTM2AQ8IVF1 878 aaPredicted RBP13□□□□□ -0.33
USP11-211ENST00000489111 STRN4Q9NRL3 753 aa13□□□□□ -0.33
USP11-211ENST00000489111 FAM208AQ9UK61 1670 aaKnown RBP12.99□□□□□ -0.33
USP11-211ENST00000489111 ADAMTS2O95450 1211 aa12.99□□□□□ -0.33
USP11-211ENST00000489111 DCTN1Q14203 1278 aa12.99□□□□□ -0.33
USP11-211ENST00000489111 C1orf141Q5JVX7 400 aa12.99□□□□□ -0.33
USP11-211ENST00000489111 MCM10Q7L590 875 aa12.99□□□□□ -0.33
USP11-211ENST00000489111 TSR2Q969E8 191 aaKnown RBP12.99□□□□□ -0.33
USP11-211ENST00000489111 BTG4Q9NY30 223 aa12.99□□□□□ -0.33
USP11-211ENST00000489111 SPG7Q9UQ90 795 aa12.98□□□□□ -0.33
USP11-211ENST00000489111 COL14A1Q05707 1796 aaKnown RBP12.97□□□□□ -0.33
USP11-211ENST00000489111 CT47B1P0C2W7 299 aaPredicted RBP12.97□□□□□ -0.33
USP11-211ENST00000489111 RRP1P56182 461 aaKnown RBP12.97□□□□□ -0.33
USP11-211ENST00000489111 FKBP8Q14318 412 aa12.97□□□□□ -0.33
USP11-211ENST00000489111 CFAP44Q96MT7 982 aa12.97□□□□□ -0.33
USP11-211ENST00000489111 CARD10Q9BWT7 1032 aa12.97□□□□□ -0.33
USP11-211ENST00000489111 MEGF6O75095 1541 aa12.97□□□□□ -0.33
USP11-211ENST00000489111 CRB1P82279 1406 aa12.96□□□□□ -0.33
USP11-211ENST00000489111 RNF123Q5XPI4 1314 aa12.96□□□□□ -0.33
USP11-211ENST00000489111 AKAP4Q5JQC9 854 aa12.96□□□□□ -0.33
USP11-211ENST00000489111 LARP1Q6PKG0 1096 aaKnown RBP12.96□□□□□ -0.33
USP11-211ENST00000489111 ZNF853P0CG23 659 aa12.95□□□□□ -0.34
USP11-211ENST00000489111 EXOSC9Q06265 439 aaKnown RBP12.95□□□□□ -0.34
USP11-211ENST00000489111 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.95□□□□□ -0.34
USP11-211ENST00000489111 MBIPQ9NS73 344 aa12.95□□□□□ -0.34
USP11-211ENST00000489111 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP11-211ENST00000489111 OVOS2A0A0G2JMS6 1433 aa12.95□□□□□ -0.34
USP11-211ENST00000489111 SPATA31A6Q5VVP1 1343 aa12.94□□□□□ -0.34
USP11-211ENST00000489111 IRX6P78412 446 aaPredicted RBP12.94□□□□□ -0.34
USP11-211ENST00000489111 IL2RBP14784 551 aa12.93□□□□□ -0.34
USP11-211ENST00000489111 HSPA1LP34931 641 aa12.93□□□□□ -0.34
USP11-211ENST00000489111 TSPYL4Q9UJ04 414 aa12.93□□□□□ -0.34
USP11-211ENST00000489111 RGPD5Q99666 1765 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 CHL1O00533 1208 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 CANXP27824 592 aaKnown RBP12.92□□□□□ -0.34
USP11-211ENST00000489111 TEFQ10587 303 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 USP35Q9P2H5 1018 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 CEMIPQ8WUJ3 1361 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 RGPD2P0DJD1 1756 aa12.92□□□□□ -0.34
USP11-211ENST00000489111 LRRC37A3O60309 1634 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 PCDH11XQ9BZA7 1347 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 PCDH11YQ9BZA8 1340 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 HSP90AB1P08238 724 aaKnown RBP12.91□□□□□ -0.34
USP11-211ENST00000489111 RARSP54136 660 aaKnown RBP12.91□□□□□ -0.34
USP11-211ENST00000489111 MPRIPQ6WCQ1 1025 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 IFNL2Q8IZJ0 200 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 IL17REQ8NFR9 667 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 ZCRB1Q8TBF4 217 aaKnown RBP12.91□□□□□ -0.34
USP11-211ENST00000489111 BABAM1Q9NWV8 329 aa12.91□□□□□ -0.34
USP11-211ENST00000489111 RNMTO43148 476 aaKnown RBP12.9□□□□□ -0.34
USP11-211ENST00000489111 PHKG2P15735 406 aa12.9□□□□□ -0.34
USP11-211ENST00000489111 TAF7Q15545 349 aaPredicted RBP12.9□□□□□ -0.34
USP11-211ENST00000489111 MEX3CQ5U5Q3 659 aaKnown RBP12.9□□□□□ -0.34
USP11-211ENST00000489111 ERICH6BQ5W0A0 696 aa12.9□□□□□ -0.34
USP11-211ENST00000489111 ZNF428Q96B54 188 aa12.9□□□□□ -0.34
USP11-211ENST00000489111 C8orf37Q96NL8 207 aa12.9□□□□□ -0.34
USP11-211ENST00000489111 SMC4Q9NTJ3 1288 aa12.9□□□□□ -0.34
USP11-211ENST00000489111 PARP4Q9UKK3 1724 aaKnown RBP12.89□□□□□ -0.35
USP11-211ENST00000489111 BCAR3O75815 825 aa12.89□□□□□ -0.35
USP11-211ENST00000489111 TWISTNBQ3B726 338 aaPredicted RBP12.89□□□□□ -0.35
USP11-211ENST00000489111 NGLY1Q96IV0 654 aa12.89□□□□□ -0.35
USP11-211ENST00000489111 PLCH1Q4KWH8 1693 aa12.89□□□□□ -0.35
USP11-211ENST00000489111 SLIT2O94813 1529 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 PLIN1O60240 522 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 DCAF5Q96JK2 942 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 BCL2L13Q9BXK5 485 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 LGR6Q9HBX8 967 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 MIS18AQ9NYP9 233 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 CCDC9Q9Y3X0 531 aaKnown RBP12.88□□□□□ -0.35
USP11-211ENST00000489111 DLG5Q8TDM6 1919 aa12.88□□□□□ -0.35
USP11-211ENST00000489111 CYP27B1O15528 508 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 ALDH1L2Q3SY69 923 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 C8orf58Q8NAV2 365 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 FRAT1Q92837 279 aaPredicted RBP12.87□□□□□ -0.35
USP11-211ENST00000489111 CDCA7Q9BWT1 371 aaPredicted RBP12.87□□□□□ -0.35
USP11-211ENST00000489111 LRP6O75581 1613 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 DISP2A7MBM2 1401 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 KDM6AO15550 1401 aaPredicted RBP12.87□□□□□ -0.35
USP11-211ENST00000489111 SPATA31A1Q5TZJ5 1347 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 KIF16BQ96L93 1317 aa12.87□□□□□ -0.35
USP11-211ENST00000489111 PKD1L3Q7Z443 1732 aa12.86□□□□□ -0.35
USP11-211ENST00000489111 BTBD11A6QL63 1104 aa12.86□□□□□ -0.35
USP11-211ENST00000489111 ELL2O00472 640 aaPredicted RBP12.86□□□□□ -0.35
USP11-211ENST00000489111 UNC5CLQ8IV45 518 aa12.86□□□□□ -0.35
USP11-211ENST00000489111 TSPYL6Q8N831 410 aa12.86□□□□□ -0.35
USP11-211ENST00000489111 SSH1Q8WYL5 1049 aa12.86□□□□□ -0.35
USP11-211ENST00000489111 THRAP3Q9Y2W1 955 aaKnown RBP12.86□□□□□ -0.35
USP11-211ENST00000489111 VAMP4O75379 141 aa12.85□□□□□ -0.35
USP11-211ENST00000489111 DDX54Q8TDD1 881 aaKnown RBP12.85□□□□□ -0.35
USP11-211ENST00000489111 SLC52A2Q9HAB3 445 aa12.85□□□□□ -0.35
USP11-211ENST00000489111 SOS1Q07889 1333 aaPredicted RBP12.85□□□□□ -0.35
USP11-211ENST00000489111 SPATA31A5Q5VU36 1347 aa12.85□□□□□ -0.35
USP11-211ENST00000489111 SPATA31A7Q8IWB4 1347 aa12.85□□□□□ -0.35
USP11-211ENST00000489111 NRAPQ86VF7 1730 aa12.85□□□□□ -0.35
USP11-211ENST00000489111 CABP4P57796 275 aa12.84□□□□□ -0.35
USP11-211ENST00000489111 NWD2Q9ULI1 1742 aa12.84□□□□□ -0.35
USP11-211ENST00000489111 TNS2Q63HR2 1409 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms