RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 LTN1O94822 1766 aa13.29□□□□□ -0.28
COL17A1-207ENST00000488320 ADCY9O60503 1353 aa13.29□□□□□ -0.28
COL17A1-207ENST00000488320 ANKRD36BQ8N2N9 1353 aa13.29□□□□□ -0.28
COL17A1-207ENST00000488320 KIF3CO14782 793 aa13.28□□□□□ -0.28
COL17A1-207ENST00000488320 CAPN15O75808 1086 aa13.28□□□□□ -0.28
COL17A1-207ENST00000488320 NME9Q86XW9 330 aa13.28□□□□□ -0.28
COL17A1-207ENST00000488320 FLAD1Q8NFF5 587 aa13.28□□□□□ -0.28
COL17A1-207ENST00000488320 USP47Q96K76 1375 aa13.28□□□□□ -0.28
COL17A1-207ENST00000488320 HMGB2P26583 209 aaKnown RBP13.27□□□□□ -0.29
COL17A1-207ENST00000488320 ZCRB1Q8TBF4 217 aaKnown RBP13.27□□□□□ -0.29
COL17A1-207ENST00000488320 LY75O60449 1722 aa13.27□□□□□ -0.29
COL17A1-207ENST00000488320 USP31Q70CQ4 1352 aa13.26□□□□□ -0.29
COL17A1-207ENST00000488320 IGSF1Q8N6C5 1336 aa13.26□□□□□ -0.29
COL17A1-207ENST00000488320 TMC1Q8TDI8 760 aa13.26□□□□□ -0.29
COL17A1-207ENST00000488320 HDGFL2Q7Z4V5 671 aaPredicted RBP13.25□□□□□ -0.29
COL17A1-207ENST00000488320 DNAJC5GQ8N7S2 189 aa13.25□□□□□ -0.29
COL17A1-207ENST00000488320 IP6K1Q92551 441 aa13.25□□□□□ -0.29
COL17A1-207ENST00000488320 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
COL17A1-207ENST00000488320 TOMM70O94826 608 aa13.24□□□□□ -0.29
COL17A1-207ENST00000488320 NSD2O96028 1365 aa13.23□□□□□ -0.29
COL17A1-207ENST00000488320 COL13A1Q5TAT6 717 aaPredicted RBP13.22□□□□□ -0.29
COL17A1-207ENST00000488320 AK7Q96M32 723 aa13.22□□□□□ -0.29
COL17A1-207ENST00000488320 MON2Q7Z3U7 1717 aa13.22□□□□□ -0.29
COL17A1-207ENST00000488320 PHF14O94880 888 aa13.21□□□□□ -0.29
COL17A1-207ENST00000488320 AMPHP49418 695 aa13.21□□□□□ -0.29
COL17A1-207ENST00000488320 C16orf71Q8IYS4 520 aaPredicted RBP13.21□□□□□ -0.29
COL17A1-207ENST00000488320 MPRIPQ6WCQ1 1025 aa13.2□□□□□ -0.3
COL17A1-207ENST00000488320 TNS4Q8IZW8 715 aa13.2□□□□□ -0.3
COL17A1-207ENST00000488320 ROCK2O75116 1388 aaKnown RBP13.2□□□□□ -0.3
COL17A1-207ENST00000488320 C5P01031 1676 aa13.19□□□□□ -0.3
COL17A1-207ENST00000488320 L3MBTL2Q969R5 705 aa13.19□□□□□ -0.3
COL17A1-207ENST00000488320 SLC12A5Q9H2X9 1139 aa13.19□□□□□ -0.3
COL17A1-207ENST00000488320 SBNO2Q9Y2G9 1366 aa13.19□□□□□ -0.3
COL17A1-207ENST00000488320 USP54Q70EL1 1684 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 FAM208AQ9UK61 1670 aaKnown RBP13.18□□□□□ -0.3
COL17A1-207ENST00000488320 ARHGAP27Q6ZUM4 889 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 SMIM5Q71RC9 77 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 RAPGEF4Q8WZA2 1011 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 KLRG1Q96E93 195 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 TERF2IPQ9NYB0 399 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 PALLDQ8WX93 1383 aa13.18□□□□□ -0.3
COL17A1-207ENST00000488320 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.17□□□□□ -0.3
COL17A1-207ENST00000488320 TATP17735 454 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-207ENST00000488320 HOXC9P31274 260 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 HTRA3P83110 453 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 SMARCC1Q92922 1105 aaPredicted RBP13.17□□□□□ -0.3
COL17A1-207ENST00000488320 COG3Q96JB2 828 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 NMRK2Q9NPI5 230 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 BCS1LQ9Y276 419 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 RGPD2P0DJD1 1756 aa13.17□□□□□ -0.3
COL17A1-207ENST00000488320 TAF1LQ8IZX4 1826 aa13.16□□□□□ -0.3
COL17A1-207ENST00000488320 FBLN1P23142 703 aa13.16□□□□□ -0.3
COL17A1-207ENST00000488320 PRELPP51888 382 aa13.16□□□□□ -0.3
COL17A1-207ENST00000488320 USHBP1Q8N6Y0 703 aa13.16□□□□□ -0.3
COL17A1-207ENST00000488320 CGNL1Q0VF96 1302 aa13.15□□□□□ -0.3
COL17A1-207ENST00000488320 MAP3K19Q56UN5 1328 aa13.15□□□□□ -0.3
COL17A1-207ENST00000488320 EDC4Q6P2E9 1401 aaKnown RBP13.15□□□□□ -0.3
COL17A1-207ENST00000488320 RBM46Q8TBY0 533 aaKnown RBP13.15□□□□□ -0.3
COL17A1-207ENST00000488320 WDR90Q96KV7 1748 aa13.15□□□□□ -0.3
COL17A1-207ENST00000488320 MEGF6O75095 1541 aa13.14□□□□□ -0.31
COL17A1-207ENST00000488320 NBPF6Q5VWK0 638 aa13.14□□□□□ -0.31
COL17A1-207ENST00000488320 NBPF4Q96M43 638 aa13.14□□□□□ -0.31
COL17A1-207ENST00000488320 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
COL17A1-207ENST00000488320 NSD3Q9BZ95 1437 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 C4BP0C0L5 1744 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 A0A0G2JLW4 131 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 FCHSD2O94868 740 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 SSFA2P28290 1259 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 TGFB2P61812 414 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 AMIGO3Q86WK7 504 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 JMYQ8N9B5 988 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 PCDH11XQ9BZA7 1347 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 PCDH11YQ9BZA8 1340 aa13.13□□□□□ -0.31
COL17A1-207ENST00000488320 FSTL1Q12841 308 aa13.12□□□□□ -0.31
COL17A1-207ENST00000488320 A0A1W2PP64 1363 aa13.11□□□□□ -0.31
COL17A1-207ENST00000488320 UBR3Q6ZT12 1888 aa13.11□□□□□ -0.31
COL17A1-207ENST00000488320 MMP10P09238 476 aa13.11□□□□□ -0.31
COL17A1-207ENST00000488320 NEUROD1Q13562 356 aa13.11□□□□□ -0.31
COL17A1-207ENST00000488320 C9orf131Q5VYM1 1079 aa13.11□□□□□ -0.31
COL17A1-207ENST00000488320 N4BP2Q86UW6 1770 aaPredicted RBP13.1□□□□□ -0.31
COL17A1-207ENST00000488320 GNPATO15228 680 aa13.1□□□□□ -0.31
COL17A1-207ENST00000488320 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
COL17A1-207ENST00000488320 RRAGCQ9HB90 399 aa13.1□□□□□ -0.31
COL17A1-207ENST00000488320 SMG6Q86US8 1419 aaKnown RBP13.1□□□□□ -0.31
COL17A1-207ENST00000488320 KDM2BQ8NHM5 1336 aa13.1□□□□□ -0.31
COL17A1-207ENST00000488320 LOC102724428A0A0B4J2F2 783 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 SIK1P57059 783 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 LINC00116Q8NCU8 138 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 PIGBQ92521 554 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 SIN3AQ96ST3 1273 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 CARD11Q9BXL7 1154 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 CICQ96RK0 1608 aaPredicted RBP13.09□□□□□ -0.31
COL17A1-207ENST00000488320 ITGB4P16144 1822 aa13.09□□□□□ -0.31
COL17A1-207ENST00000488320 CYP27B1O15528 508 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 DPEP1P16444 411 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 TMF1P82094 1093 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 TRAPPC3LQ5T215 181 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 CCDC87Q9NVE4 849 aa13.08□□□□□ -0.32
COL17A1-207ENST00000488320 NLGN1Q8N2Q7 840 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms