RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 LARP1Q6PKG0 1096 aaKnown RBP10.86□□□□□ -0.67
USP4-210ENST00000483212 NUTM2AQ8IVF1 878 aaPredicted RBP10.86□□□□□ -0.67
USP4-210ENST00000483212 CDCA7LQ96GN5 454 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 CARD10Q9BWT7 1032 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 NLRP2Q9NX02 1062 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 PKD1L3Q7Z443 1732 aa10.86□□□□□ -0.67
USP4-210ENST00000483212 DISP2A7MBM2 1401 aa10.85□□□□□ -0.67
USP4-210ENST00000483212 LRRC37A3O60309 1634 aa10.85□□□□□ -0.67
USP4-210ENST00000483212 CSB-PGBD3P0DP91 1061 aa10.85□□□□□ -0.67
USP4-210ENST00000483212 RIPK4P57078 832 aa10.85□□□□□ -0.67
USP4-210ENST00000483212 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
USP4-210ENST00000483212 TRMT2AQ8IZ69 625 aaKnown RBP10.85□□□□□ -0.67
USP4-210ENST00000483212 SPINK5Q9NQ38 1064 aaPredicted RBP10.85□□□□□ -0.67
USP4-210ENST00000483212 OVOS2A0A0G2JMS6 1433 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 NEFMP07197 916 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 WDR63Q8IWG1 891 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 GAS2L2Q8NHY3 880 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 STRN4Q9NRL3 753 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 BCL9LQ86UU0 1499 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 ADAMTS7Q9UKP4 1686 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 WNK3Q9BYP7 1800 aa10.84□□□□□ -0.67
USP4-210ENST00000483212 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.84□□□□□ -0.67
USP4-210ENST00000483212 PARP4Q9UKK3 1724 aaKnown RBP10.84□□□□□ -0.67
USP4-210ENST00000483212 GOLGA2Q08379 1002 aa10.83□□□□□ -0.68
USP4-210ENST00000483212 SLFN5Q08AF3 891 aa10.83□□□□□ -0.68
USP4-210ENST00000483212 TOM1L2Q6ZVM7 507 aa10.83□□□□□ -0.68
USP4-210ENST00000483212 FNBP4Q8N3X1 1017 aaPredicted RBP10.83□□□□□ -0.68
USP4-210ENST00000483212 IL16Q14005 1332 aa10.83□□□□□ -0.68
USP4-210ENST00000483212 MAP3K5Q99683 1374 aa10.82□□□□□ -0.68
USP4-210ENST00000483212 SHANK3Q9BYB0 1731 aa10.82□□□□□ -0.68
USP4-210ENST00000483212 EVA1CP58658 441 aa10.82□□□□□ -0.68
USP4-210ENST00000483212 AMOTQ4VCS5 1084 aa10.82□□□□□ -0.68
USP4-210ENST00000483212 DUSP27Q5VZP5 1158 aa10.82□□□□□ -0.68
USP4-210ENST00000483212 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.82□□□□□ -0.684e-6■■■■■ 27.4
USP4-210ENST00000483212 HTATSF1O43719 755 aaKnown RBP10.81□□□□□ -0.68
USP4-210ENST00000483212 TATP17735 454 aaPredicted RBP10.81□□□□□ -0.68
USP4-210ENST00000483212 LMOD3Q0VAK6 560 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 PLEKHO1Q53GL0 409 aaPredicted RBP10.81□□□□□ -0.68
USP4-210ENST00000483212 FBXO41Q8TF61 875 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 RAPGEF4Q8WZA2 1011 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
USP4-210ENST00000483212 SPATA31A1Q5TZJ5 1347 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 SPATA31A5Q5VU36 1347 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 SPATA31A7Q8IWB4 1347 aa10.81□□□□□ -0.68
USP4-210ENST00000483212 CEMIPQ8WUJ3 1361 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 E9PSI1 815 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 ZNF853P0CG23 659 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 DCTN1Q14203 1278 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 UNC5CLQ8IV45 518 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 C8orf37Q96NL8 207 aa10.8□□□□□ -0.68
USP4-210ENST00000483212 GNAT3A8MTJ3 354 aa10.79□□□□□ -0.68
USP4-210ENST00000483212 IL2RBP14784 551 aa10.79□□□□□ -0.68
USP4-210ENST00000483212 AKAP4Q5JQC9 854 aa10.79□□□□□ -0.68
USP4-210ENST00000483212 ZNF530Q6P9A1 599 aaPredicted RBP10.79□□□□□ -0.68
USP4-210ENST00000483212 MCM10Q7L590 875 aa10.79□□□□□ -0.68
USP4-210ENST00000483212 IL17REQ8NFR9 667 aa10.79□□□□□ -0.68
USP4-210ENST00000483212 KDM6AO15550 1401 aaPredicted RBP10.78□□□□□ -0.68
USP4-210ENST00000483212 CYP27B1O15528 508 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 PHKG2P15735 406 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 VPS72Q15906 364 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 NGLY1Q96IV0 654 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 THRAP3Q9Y2W1 955 aaKnown RBP10.78□□□□□ -0.68
USP4-210ENST00000483212 MRC1P22897 1456 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 FANCIQ9NVI1 1328 aa10.78□□□□□ -0.68
USP4-210ENST00000483212 ATRNO75882 1429 aa10.77□□□□□ -0.68
USP4-210ENST00000483212 BARGINQ6ZT62 677 aa10.77□□□□□ -0.69
USP4-210ENST00000483212 IFT57Q9NWB7 429 aa10.77□□□□□ -0.69
USP4-210ENST00000483212 SPG7Q9UQ90 795 aa10.77□□□□□ -0.69
USP4-210ENST00000483212 GLI3P10071 1580 aa10.77□□□□□ -0.69
USP4-210ENST00000483212 TNS2Q63HR2 1409 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 SIPA1L3O60292 1781 aaPredicted RBP10.76□□□□□ -0.69
USP4-210ENST00000483212 CHL1O00533 1208 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 RNMTO43148 476 aaKnown RBP10.76□□□□□ -0.69
USP4-210ENST00000483212 CALD1Q05682 793 aaKnown RBP10.76□□□□□ -0.69
USP4-210ENST00000483212 LHX8Q68G74 356 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 ZCRB1Q8TBF4 217 aaKnown RBP10.76□□□□□ -0.69
USP4-210ENST00000483212 CFAP44Q96MT7 982 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 MYH16Q9H6N6 1097 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 LGR6Q9HBX8 967 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 USP35Q9P2H5 1018 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 USP21Q9UK80 565 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 AFF2P51816 1311 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 THSD7AQ9UPZ6 1657 aa10.76□□□□□ -0.69
USP4-210ENST00000483212 SCN11AQ9UI33 1791 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 NKX1-1Q15270 411 aaPredicted RBP10.75□□□□□ -0.69
USP4-210ENST00000483212 C1orf141Q5JVX7 400 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 MEX3CQ5U5Q3 659 aaKnown RBP10.75□□□□□ -0.69
USP4-210ENST00000483212 IFNL2Q8IZJ0 200 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 RTF1Q92541 710 aaKnown RBP10.75□□□□□ -0.69
USP4-210ENST00000483212 TSR2Q969E8 191 aaKnown RBP10.75□□□□□ -0.69
USP4-210ENST00000483212 MBIPQ9NS73 344 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 PCDH11XQ9BZA7 1347 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 PCDH11YQ9BZA8 1340 aa10.75□□□□□ -0.69
USP4-210ENST00000483212 VIRMAQ69YN4 1812 aaKnown RBP10.74□□□□□ -0.69
USP4-210ENST00000483212 KCNA4P22459 653 aa10.74□□□□□ -0.69
USP4-210ENST00000483212 GNAI1P63096 354 aa10.74□□□□□ -0.69
USP4-210ENST00000483212 MPRIPQ6WCQ1 1025 aa10.74□□□□□ -0.69
USP4-210ENST00000483212 CDCA7Q9BWT1 371 aaPredicted RBP10.74□□□□□ -0.69
USP4-210ENST00000483212 TOGARAM1Q9Y4F4 1720 aa10.74□□□□□ -0.69
USP4-210ENST00000483212 KDM3BQ7LBC6 1761 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms