RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TIAM1Q13009 1591 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 CUL7Q14999 1698 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 ESPNB1AK53 854 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 SLC4A2P04920 1241 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 ZSCAN25Q6NSZ9 544 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 FAM107BQ9H098 131 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 PRXQ9BXM0 1461 aa10.4□□□□□ -0.74
SYNE1-224ENST00000478916 CCDC57Q2TAC2 916 aa10.4□□□□□ -0.75
SYNE1-224ENST00000478916 SRCIN1Q9C0H9 1055 aa10.4□□□□□ -0.75
SYNE1-224ENST00000478916 GBP3Q9H0R5 595 aa10.4□□□□□ -0.75
SYNE1-224ENST00000478916 MAGI1Q96QZ7 1491 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-224ENST00000478916 EXOSC9Q06265 439 aaKnown RBP10.39□□□□□ -0.75
SYNE1-224ENST00000478916 AEBP1Q8IUX7 1158 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 NBPF1Q3BBV0 1214 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 TNMDQ9H2S6 317 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 CDK5RAP3Q96JB5 506 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 BTBD11A6QL63 1104 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 NF2P35240 595 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 TMEM132AQ24JP5 1023 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 ADGRL1O94910 1474 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 GCC1Q96CN9 775 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 TMCO3Q6UWJ1 677 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 TICAM2Q86XR7 235 aa10.39□□□□□ -0.75
SYNE1-224ENST00000478916 FAM177A1Q8N128 213 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-224ENST00000478916 GOLGA6L10A0A0M3HER8 536 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 STARD3NLO95772 234 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 MAP2K1Q02750 393 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-224ENST00000478916 CCDC91Q7Z6B0 441 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 STIM1Q13586 685 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 GPATCH11Q8N954 259 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 JMYQ8N9B5 988 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 LRRFIP2Q9Y608 721 aaKnown RBP10.38□□□□□ -0.75
SYNE1-224ENST00000478916 ABCA10Q8WWZ4 1543 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 MYL6BP14649 208 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 FIBPO43427 364 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 RBM5P52756 815 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE1-224ENST00000478916 UBXN4Q92575 508 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 DMRT2Q9Y5R5 561 aa10.38□□□□□ -0.75
SYNE1-224ENST00000478916 CRACR2AQ9BSW2 395 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 ZNF652Q9Y2D9 606 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 STK38Q15208 465 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 MICALCLQ6ZW33 695 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 NUDT16Q96DE0 195 aaKnown RBP10.37□□□□□ -0.75
SYNE1-224ENST00000478916 CDK13Q14004 1512 aaKnown RBP10.37□□□□□ -0.75
SYNE1-224ENST00000478916 ARHGEF11O15085 1522 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 XPCQ01831 940 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-224ENST00000478916 MAP9Q49MG5 647 aa10.37□□□□□ -0.75
SYNE1-224ENST00000478916 LRPPRCP42704 1394 aaKnown RBP10.36□□□□□ -0.75
SYNE1-224ENST00000478916 CCDC61Q9Y6R9 512 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 KIF2AO00139 706 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-224ENST00000478916 CCDC148Q8NFR7 591 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 NEK4P51957 841 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 CBX1P83916 185 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 WDR63Q8IWG1 891 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 IGHMBP2P38935 993 aaKnown RBP10.36□□□□□ -0.75
SYNE1-224ENST00000478916 ATP2B2Q01814 1243 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 NOB1Q9ULX3 412 aaKnown RBP10.36□□□□□ -0.75
SYNE1-224ENST00000478916 AKNAQ7Z591 1439 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 PAF1Q8N7H5 531 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 MCM3P25205 808 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 CFAP45Q9UL16 551 aa10.36□□□□□ -0.75
SYNE1-224ENST00000478916 PRDM10Q9NQV6 1147 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 WDR33Q9C0J8 1336 aaKnown RBP10.35□□□□□ -0.75
SYNE1-224ENST00000478916 PDCL3Q9H2J4 239 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 GNAT3A8MTJ3 354 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 ZC3H6P61129 1189 aaKnown RBP10.35□□□□□ -0.75
SYNE1-224ENST00000478916 RRS1Q15050 365 aaKnown RBP10.35□□□□□ -0.75
SYNE1-224ENST00000478916 ZSCAN30Q86W11 494 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 TMOD3Q9NYL9 352 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 FCHSD2O94868 740 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 CGNQ9P2M7 1197 aaKnown RBP10.35□□□□□ -0.75
SYNE1-224ENST00000478916 FAM135AQ9P2D6 1515 aa10.35□□□□□ -0.75
SYNE1-224ENST00000478916 PDE3AQ14432 1141 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 TRIM22Q8IYM9 498 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 CEP63Q96MT8 703 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 SIL1Q9H173 461 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 CAMSAP2Q08AD1 1489 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 KRT18P05783 430 aaKnown RBP10.34□□□□□ -0.75
SYNE1-224ENST00000478916 SPATA24Q86W54 205 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 GRIN2AQ12879 1464 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 ZPR1O75312 459 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 TMOD2Q9NZR1 351 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 PPP6R1Q9UPN7 881 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 KRT85P78386 507 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 CEBPZQ03701 1054 aaKnown RBP10.34□□□□□ -0.75
SYNE1-224ENST00000478916 JAKMIP3Q5VZ66 844 aa10.34□□□□□ -0.75
SYNE1-224ENST00000478916 TSR2Q969E8 191 aaKnown RBP10.34□□□□□ -0.75
SYNE1-224ENST00000478916 ANKRD1Q15327 319 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 CCDC69A6NI79 296 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 STAMBPO95630 424 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 KIAA1328Q86T90 577 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 NSD3Q9BZ95 1437 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 SMTNL1A8MU46 457 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 IPO4Q8TEX9 1081 aaKnown RBP10.33□□□□□ -0.76
SYNE1-224ENST00000478916 CEP126Q9P2H0 1117 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 EPB41L2O43491 1005 aaKnown RBP10.33□□□□□ -0.76
SYNE1-224ENST00000478916 AMOTQ4VCS5 1084 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 SOGA3Q5TF21 947 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 BICDL1Q6ZP65 573 aa10.33□□□□□ -0.76
SYNE1-224ENST00000478916 TAF4BQ92750 862 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms