RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 FKBP15Q5T1M5 1219 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 RBM27Q9P2N5 1060 aaKnown RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 SH3BP5O60239 455 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 WASF1Q92558 559 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 NOL7Q9UMY1 257 aaKnown RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 SSR1P43307 286 aaKnown RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.31□□□□□ -1.4
USF3-202ENST00000478658 PRPF40AO75400 957 aaKnown RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 TTLL5Q6EMB2 1281 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 ZSCAN25Q6NSZ9 544 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 CACTINQ8WUQ7 758 aaKnown RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 BCAP29Q9UHQ4 241 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 ZNF330Q9Y3S2 320 aaPredicted RBP6.31□□□□□ -1.4
USF3-202ENST00000478658 EFCAB14O75071 495 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 SRGAP1Q7Z6B7 1085 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 CLUAP1Q96AJ1 413 aa6.31□□□□□ -1.4
USF3-202ENST00000478658 MUM1L1Q5H9M0 696 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 CARD11Q9BXL7 1154 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 KINO60870 393 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 HOXA7P31268 230 aaPredicted RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 VCXQ9H320 206 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 SMG6Q86US8 1419 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 RGS3P49796 1198 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 MVPQ14764 893 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 ANKRD1Q15327 319 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 RBM26Q5T8P6 1007 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 HSP90AA5PQ58FG0 334 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 BICD2Q8TD16 824 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 RASSF4Q9H2L5 321 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 PHAXQ9H814 394 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 TMOD2Q9NZR1 351 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 SARNPP82979 210 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 SMC1BQ8NDV3 1235 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 FSD1Q9BTV5 496 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 UTP14AQ9BVJ6 771 aaKnown RBP6.3□□□□□ -1.4
USF3-202ENST00000478658 ALS2CR12Q96Q35 445 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 EDEM3Q9BZQ6 932 aa6.3□□□□□ -1.4
USF3-202ENST00000478658 PYGLP06737 847 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 NCBP1Q09161 790 aaKnown RBP6.29□□□□□ -1.4
USF3-202ENST00000478658 MICALL1Q8N3F8 863 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ANKS4BQ8N8V4 417 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ERCC6Q03468 1493 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 RPUSD2Q8IZ73 545 aaKnown RBP6.29□□□□□ -1.4
USF3-202ENST00000478658 IFT74Q96LB3 600 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 TPD52P55327 224 aaPredicted RBP6.29□□□□□ -1.4
USF3-202ENST00000478658 ZNF592Q92610 1267 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 USP25Q9UHP3 1055 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 A0A1B0GW55 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L2P0CJ85 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L3P0CJ86 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L4P0CJ87 422 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L5P0CJ88 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L6P0CJ89 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4L7P0CJ90 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 DUX4Q9UBX2 424 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ZKSCAN5Q9Y2L8 839 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ESPNB1AK53 854 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 TERF1P54274 439 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 NONOQ15233 471 aaKnown RBP eCLIP6.29□□□□□ -1.4
USF3-202ENST00000478658 TAOK1Q7L7X3 1001 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 SLF2Q8IX21 1173 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 TSG101Q99816 390 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 UQCRHP07919 91 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 NACAP1Q9BZK3 213 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 CUL4BQ13620 913 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ATP6V0A1Q93050 837 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 TPCN1Q9ULQ1 816 aa6.29□□□□□ -1.4
USF3-202ENST00000478658 ATP2A1O14983 1001 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 CTAGE5O15320 804 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 PAK3O75914 559 aaPredicted RBP6.28□□□□□ -1.4
USF3-202ENST00000478658 ATP2A2P16615 1042 aaKnown RBP6.28□□□□□ -1.4
USF3-202ENST00000478658 ZNF569Q5MCW4 686 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 PPP1R14CQ8TAE6 165 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 LRRC27Q9C0I9 530 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 IFT57Q9NWB7 429 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 IRX4P78413 519 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 VCX3AQ9NNX9 186 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 FAM177BA6PVY3 158 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 LARP1Q6PKG0 1096 aaKnown RBP6.28□□□□□ -1.4
USF3-202ENST00000478658 STMN2Q93045 179 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 CCDC7Q96M83 1385 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 MNAT1P51948 309 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 EHBP1Q8NDI1 1231 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 CRBNQ96SW2 442 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 PRKRIP1Q9H875 184 aaPredicted RBP6.28□□□□□ -1.4
USF3-202ENST00000478658 DAAM1Q9Y4D1 1078 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 CTNNA2P26232 953 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 CRACR2AQ9BSW2 395 aa6.28□□□□□ -1.4
USF3-202ENST00000478658 ORC3Q9UBD5 711 aaPredicted RBP6.28□□□□□ -1.4
USF3-202ENST00000478658 XPCQ01831 940 aaPredicted RBP6.27□□□□□ -1.4
USF3-202ENST00000478658 INTS3Q68E01 1043 aaKnown RBP6.27□□□□□ -1.4
USF3-202ENST00000478658 TDO2P48775 406 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 KIF11P52732 1056 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 BIRC2Q13490 618 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 PODNQ7Z5L7 613 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 CEP120Q8N960 986 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 FBXW7Q969H0 707 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 FMNL2Q96PY5 1086 aa6.27□□□□□ -1.41
USF3-202ENST00000478658 IQCGQ9H095 443 aaKnown RBP6.27□□□□□ -1.41
USF3-202ENST00000478658 SUDS3Q9H7L9 328 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms