RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 USP19O94966 1318 aa15.5■□□□□ 0.07
PTPRF-212ENST00000477970 RBM33Q96EV2 1170 aaKnown RBP15.49■□□□□ 0.07
PTPRF-212ENST00000477970 USP35Q9P2H5 1018 aa15.49■□□□□ 0.07
PTPRF-212ENST00000477970 CRB1P82279 1406 aa15.48■□□□□ 0.07
PTPRF-212ENST00000477970 PIP4K2BP78356 416 aa15.48■□□□□ 0.07
PTPRF-212ENST00000477970 COL22A1Q8NFW1 1626 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-212ENST00000477970 HSPA1LP34931 641 aa15.48■□□□□ 0.07
PTPRF-212ENST00000477970 TWISTNBQ3B726 338 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-212ENST00000477970 C14orf37Q86TY3 774 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 RTL1A6NKG5 1358 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 CHL1O00533 1208 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 SULT6B1Q6IMI4 303 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 MED1Q15648 1581 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-212ENST00000477970 MAP3K19Q56UN5 1328 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 IGSF1Q8N6C5 1336 aa15.47■□□□□ 0.07
PTPRF-212ENST00000477970 API5Q9BZZ5 524 aaKnown RBP15.46■□□□□ 0.07
PTPRF-212ENST00000477970 THUMPD2Q9BTF0 503 aaKnown RBP15.46■□□□□ 0.07
PTPRF-212ENST00000477970 ZBTB7BO15156 539 aaPredicted RBP15.46■□□□□ 0.06
PTPRF-212ENST00000477970 TSPYL6Q8N831 410 aa15.45■□□□□ 0.06
PTPRF-212ENST00000477970 LAS1LQ9Y4W2 734 aaKnown RBP15.45■□□□□ 0.06
PTPRF-212ENST00000477970 HTATSF1O43719 755 aaKnown RBP15.45■□□□□ 0.06
PTPRF-212ENST00000477970 HSP90AB2PQ58FF8 381 aa15.45■□□□□ 0.06
PTPRF-212ENST00000477970 AEBP1Q8IUX7 1158 aa15.45■□□□□ 0.06
PTPRF-212ENST00000477970 BRINP3Q76B58 766 aa15.44■□□□□ 0.06
PTPRF-212ENST00000477970 NGDNQ8NEJ9 315 aaKnown RBP15.44■□□□□ 0.06
PTPRF-212ENST00000477970 NUCB1Q02818 461 aa15.43■□□□□ 0.06
PTPRF-212ENST00000477970 C8orf58Q8NAV2 365 aa15.43■□□□□ 0.06
PTPRF-212ENST00000477970 GCC1Q96CN9 775 aa15.43■□□□□ 0.06
PTPRF-212ENST00000477970 LTN1O94822 1766 aa15.43■□□□□ 0.06
PTPRF-212ENST00000477970 N4BP2Q86UW6 1770 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-212ENST00000477970 RGS12O14924 1447 aa15.43■□□□□ 0.06
PTPRF-212ENST00000477970 NFAT5O94916 1531 aa15.42■□□□□ 0.06
PTPRF-212ENST00000477970 FAM83GA6ND36 823 aa15.42■□□□□ 0.06
PTPRF-212ENST00000477970 TRPM3Q9HCF6 1732 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-212ENST00000477970 PXDNQ92626 1479 aa15.42■□□□□ 0.06
PTPRF-212ENST00000477970 PTPRCP08575 1304 aa15.41■□□□□ 0.06
PTPRF-212ENST00000477970 SOS1Q07889 1333 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-212ENST00000477970 NUTM2FA1L443 756 aa15.4■□□□□ 0.06
PTPRF-212ENST00000477970 INTS3Q68E01 1043 aaKnown RBP15.4■□□□□ 0.06
PTPRF-212ENST00000477970 GAS2L2Q8NHY3 880 aa15.4■□□□□ 0.06
PTPRF-212ENST00000477970 TBC1D32Q96NH3 1257 aa15.4■□□□□ 0.06
PTPRF-212ENST00000477970 FAM208AQ9UK61 1670 aaKnown RBP15.4■□□□□ 0.06
PTPRF-212ENST00000477970 JCADQ9P266 1359 aa15.4■□□□□ 0.06
PTPRF-212ENST00000477970 UPF2Q9HAU5 1272 aaKnown RBP15.4■□□□□ 0.06
PTPRF-212ENST00000477970 BABAM1Q9NWV8 329 aa15.4■□□□□ 0.06
PTPRF-212ENST00000477970 CACNA1FO60840 1977 aa15.39■□□□□ 0.05
PTPRF-212ENST00000477970 SEC24BO95487 1268 aa15.39■□□□□ 0.05
PTPRF-212ENST00000477970 RTL5Q5HYW3 569 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-212ENST00000477970 DAXXQ9UER7 740 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-212ENST00000477970 DCTN1Q14203 1278 aa15.38■□□□□ 0.05
PTPRF-212ENST00000477970 HOXC9P31274 260 aa15.38■□□□□ 0.05
PTPRF-212ENST00000477970 SOS2Q07890 1332 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-212ENST00000477970 ALS2Q96Q42 1657 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 EYA1Q99502 592 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 ABCA3Q99758 1704 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 SLIT3O75094 1523 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 AMPHP49418 695 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 CHD1LQ86WJ1 897 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 CAMTA1Q9Y6Y1 1673 aa15.37■□□□□ 0.05
PTPRF-212ENST00000477970 MTHFSDQ2M296 383 aaKnown RBP15.37■□□□□ 0.05
PTPRF-212ENST00000477970 CRYBG1Q9Y4K1 1723 aa15.36■□□□□ 0.05
PTPRF-212ENST00000477970 NLRP6P59044 892 aa15.36■□□□□ 0.05
PTPRF-212ENST00000477970 NBR1Q14596 966 aa15.36■□□□□ 0.05
PTPRF-212ENST00000477970 BECN1Q14457 450 aa15.36■□□□□ 0.05
PTPRF-212ENST00000477970 PHF8Q9UPP1 1060 aa15.35■□□□□ 0.05
PTPRF-212ENST00000477970 SPATA31A6Q5VVP1 1343 aa15.35■□□□□ 0.05
PTPRF-212ENST00000477970 LMO7Q8WWI1 1683 aa15.35■□□□□ 0.05
PTPRF-212ENST00000477970 MCM10Q7L590 875 aa15.35■□□□□ 0.05
PTPRF-212ENST00000477970 NCAPD2Q15021 1401 aa15.35■□□□□ 0.05
PTPRF-212ENST00000477970 ATP10DQ9P241 1426 aa15.34■□□□□ 0.05
PTPRF-212ENST00000477970 RTF1Q92541 710 aaKnown RBP15.34■□□□□ 0.05
PTPRF-212ENST00000477970 BMP2KLQ5H9B9 411 aa15.34■□□□□ 0.05
PTPRF-212ENST00000477970 NPHP3Q7Z494 1330 aa15.34■□□□□ 0.05
PTPRF-212ENST00000477970 ELL2O00472 640 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-212ENST00000477970 SIRT2Q8IXJ6 389 aa15.33■□□□□ 0.04
PTPRF-212ENST00000477970 MAP3K5Q99683 1374 aa15.33■□□□□ 0.04
PTPRF-212ENST00000477970 PXDNLA1KZ92 1463 aa15.32■□□□□ 0.04
PTPRF-212ENST00000477970 ORAI2Q96SN7 254 aa15.32■□□□□ 0.04
PTPRF-212ENST00000477970 KDM3BQ7LBC6 1761 aa15.32■□□□□ 0.04
PTPRF-212ENST00000477970 RPAP2Q8IXW5 612 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-212ENST00000477970 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
PTPRF-212ENST00000477970 LRRC59Q96AG4 307 aaKnown RBP15.31■□□□□ 0.04
PTPRF-212ENST00000477970 EIF5BO60841 1220 aaKnown RBP15.31■□□□□ 0.04
PTPRF-212ENST00000477970 IP6K1Q92551 441 aa15.31■□□□□ 0.04
PTPRF-212ENST00000477970 LRP6O75581 1613 aa15.31■□□□□ 0.04
PTPRF-212ENST00000477970 GNAT3A8MTJ3 354 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 ANKRD44Q8N8A2 993 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 KCNH5Q8NCM2 988 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 DCTPP1Q9H773 170 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 OVOS2A0A0G2JMS6 1433 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 DEKP35659 375 aaKnown RBP15.3■□□□□ 0.04
PTPRF-212ENST00000477970 TSPYL4Q9UJ04 414 aa15.3■□□□□ 0.04
PTPRF-212ENST00000477970 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.29■□□□□ 0.04
PTPRF-212ENST00000477970 CEMIPQ8WUJ3 1361 aa15.29■□□□□ 0.04
PTPRF-212ENST00000477970 ESCO1Q5FWF5 840 aa15.29■□□□□ 0.04
PTPRF-212ENST00000477970 FOXO3O43524 673 aa15.28■□□□□ 0.04
PTPRF-212ENST00000477970 RBM25P49756 843 aaKnown RBP15.28■□□□□ 0.04
PTPRF-212ENST00000477970 TNS3Q68CZ2 1445 aa15.28■□□□□ 0.04
PTPRF-212ENST00000477970 SLC4A3P48751 1232 aa15.28■□□□□ 0.04
PTPRF-212ENST00000477970 C22orf23Q9BZE7 217 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms