RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 PRIM1P49642 420 aaKnown RBP14.12□□□□□ -0.15
SMARCB1-206ENST00000477836 CENPJQ9HC77 1338 aaPredicted RBP14.11□□□□□ -0.15
SMARCB1-206ENST00000477836 ANKRD24Q8TF21 1146 aa14.1□□□□□ -0.15
SMARCB1-206ENST00000477836 ANKRD36BQ8N2N9 1353 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 SLC34A2O95436 690 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 NMRK2Q9NPI5 230 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 DOT1LQ8TEK3 1739 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 TTC21AQ8NDW8 1320 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 NSD2O96028 1365 aa14.09□□□□□ -0.15
SMARCB1-206ENST00000477836 NBPF1Q3BBV0 1214 aa14.08□□□□□ -0.16
SMARCB1-206ENST00000477836 ZNF692Q9BU19 519 aaPredicted RBP14.08□□□□□ -0.16
SMARCB1-206ENST00000477836 C16orf71Q8IYS4 520 aaPredicted RBP14.07□□□□□ -0.16
SMARCB1-206ENST00000477836 RBM46Q8TBY0 533 aaKnown RBP14.07□□□□□ -0.16
SMARCB1-206ENST00000477836 KIAA1210Q9ULL0 1709 aa14.07□□□□□ -0.16
SMARCB1-206ENST00000477836 FLAD1Q8NFF5 587 aa14.06□□□□□ -0.16
SMARCB1-206ENST00000477836 USP47Q96K76 1375 aa14.06□□□□□ -0.16
SMARCB1-206ENST00000477836 CICQ96RK0 1608 aaPredicted RBP14.05□□□□□ -0.16
SMARCB1-206ENST00000477836 LTN1O94822 1766 aa14.05□□□□□ -0.16
SMARCB1-206ENST00000477836 C5P01031 1676 aa14.04□□□□□ -0.16
SMARCB1-206ENST00000477836 FSTL1Q12841 308 aa14.03□□□□□ -0.16
SMARCB1-206ENST00000477836 EVC2Q86UK5 1308 aa14.03□□□□□ -0.16
SMARCB1-206ENST00000477836 KTN1Q86UP2 1357 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-206ENST00000477836 HSPA1AP0DMV8 641 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-206ENST00000477836 HSPA1BP0DMV9 641 aaKnown RBP14.02□□□□□ -0.17
SMARCB1-206ENST00000477836 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.02□□□□□ -0.17
SMARCB1-206ENST00000477836 USP54Q70EL1 1684 aa14.01□□□□□ -0.17
SMARCB1-206ENST00000477836 LTV1Q96GA3 475 aaPredicted RBP14.01□□□□□ -0.17
SMARCB1-206ENST00000477836 PHF14O94880 888 aa14□□□□□ -0.17
SMARCB1-206ENST00000477836 ARHGAP27Q6ZUM4 889 aa14□□□□□ -0.17
SMARCB1-206ENST00000477836 SMIM5Q71RC9 77 aa14□□□□□ -0.17
SMARCB1-206ENST00000477836 AK7Q96M32 723 aa14□□□□□ -0.17
SMARCB1-206ENST00000477836 BCS1LQ9Y276 419 aa14□□□□□ -0.17
SMARCB1-206ENST00000477836 TAF1LQ8IZX4 1826 aa13.99□□□□□ -0.17
SMARCB1-206ENST00000477836 USP31Q70CQ4 1352 aa13.99□□□□□ -0.17
SMARCB1-206ENST00000477836 AMIGO3Q86WK7 504 aa13.99□□□□□ -0.17
SMARCB1-206ENST00000477836 NME9Q86XW9 330 aa13.99□□□□□ -0.17
SMARCB1-206ENST00000477836 ZCRB1Q8TBF4 217 aaKnown RBP13.99□□□□□ -0.17
SMARCB1-206ENST00000477836 RAB3GAP2Q9H2M9 1393 aa13.98□□□□□ -0.17
SMARCB1-206ENST00000477836 HMGB2P26583 209 aaKnown RBP13.98□□□□□ -0.17
SMARCB1-206ENST00000477836 C4BP0C0L5 1744 aa13.97□□□□□ -0.17
SMARCB1-206ENST00000477836 MON2Q7Z3U7 1717 aa13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 TOGARAM1Q9Y4F4 1720 aa13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 FAM208AQ9UK61 1670 aaKnown RBP13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 PXDNLA1KZ92 1463 aa13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 C9orf131Q5VYM1 1079 aa13.96□□□□□ -0.17
SMARCB1-206ENST00000477836 N4BP2Q86UW6 1770 aaPredicted RBP13.96□□□□□ -0.18
SMARCB1-206ENST00000477836 PALLDQ8WX93 1383 aa13.96□□□□□ -0.18
SMARCB1-206ENST00000477836 KCPQ6ZWJ8 1503 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 KDM2BQ8NHM5 1336 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 A0A0G2JLW4 131 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 TRIM26Q12899 539 aaPredicted RBP13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 IP6K1Q92551 441 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 RRAGCQ9HB90 399 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 UBR3Q6ZT12 1888 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 PLEKHG2Q9H7P9 1386 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 MEGF6O75095 1541 aa13.95□□□□□ -0.18
SMARCB1-206ENST00000477836 SMC1BQ8NDV3 1235 aa13.94□□□□□ -0.18
SMARCB1-206ENST00000477836 KIAA1551Q9HCM1 1747 aa13.94□□□□□ -0.18
SMARCB1-206ENST00000477836 NSD3Q9BZ95 1437 aa13.93□□□□□ -0.18
SMARCB1-206ENST00000477836 FCHSD2O94868 740 aa13.93□□□□□ -0.18
SMARCB1-206ENST00000477836 TGFB2P61812 414 aa13.93□□□□□ -0.18
SMARCB1-206ENST00000477836 MPRIPQ6WCQ1 1025 aa13.93□□□□□ -0.18
SMARCB1-206ENST00000477836 MMP10P09238 476 aa13.92□□□□□ -0.18
SMARCB1-206ENST00000477836 SSFA2P28290 1259 aa13.92□□□□□ -0.18
SMARCB1-206ENST00000477836 PCDH10Q9P2E7 1040 aa13.92□□□□□ -0.18
SMARCB1-206ENST00000477836 PKD1L3Q7Z443 1732 aa13.92□□□□□ -0.18
SMARCB1-206ENST00000477836 KIF13BQ9NQT8 1826 aa13.92□□□□□ -0.18
SMARCB1-206ENST00000477836 RGPD2P0DJD1 1756 aa13.91□□□□□ -0.18
SMARCB1-206ENST00000477836 SBNO2Q9Y2G9 1366 aa13.91□□□□□ -0.18
SMARCB1-206ENST00000477836 C10orf71Q711Q0 1435 aa13.9□□□□□ -0.18
SMARCB1-206ENST00000477836 DPEP1P16444 411 aa13.9□□□□□ -0.18
SMARCB1-206ENST00000477836 TNRC6CQ9HCJ0 1690 aaKnown RBP13.89□□□□□ -0.19
SMARCB1-206ENST00000477836 SMARCC1Q92922 1105 aaPredicted RBP13.89□□□□□ -0.19
SMARCB1-206ENST00000477836 RNF181Q9P0P0 153 aa13.89□□□□□ -0.19
SMARCB1-206ENST00000477836 HOXC9P31274 260 aa13.88□□□□□ -0.19
SMARCB1-206ENST00000477836 LINC00116Q8NCU8 138 aa13.88□□□□□ -0.19
SMARCB1-206ENST00000477836 CD163L1Q9NR16 1453 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 GNPATO15228 680 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 USHBP1Q8N6Y0 703 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 TMC1Q8TDI8 760 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 RAPGEF4Q8WZA2 1011 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 CGNL1Q0VF96 1302 aa13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 BRCA1P38398 1863 aaKnown RBP13.87□□□□□ -0.19
SMARCB1-206ENST00000477836 AMPHP49418 695 aa13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 HDGFL2Q7Z4V5 671 aaPredicted RBP13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 PCGF6Q9BYE7 350 aa13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 MAP3K19Q56UN5 1328 aa13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 PCDH11XQ9BZA7 1347 aa13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 PCDH11YQ9BZA8 1340 aa13.86□□□□□ -0.19
SMARCB1-206ENST00000477836 ARFGEF1Q9Y6D6 1849 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 EDC4Q6P2E9 1401 aaKnown RBP13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 TATP17735 454 aaPredicted RBP13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 FAM161AQ3B820 660 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 NBPF6Q5VWK0 638 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 NBPF4Q96M43 638 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 CCDC87Q9NVE4 849 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 ITGB4P16144 1822 aa13.85□□□□□ -0.19
SMARCB1-206ENST00000477836 LOC102724428A0A0B4J2F2 783 aa13.84□□□□□ -0.19
SMARCB1-206ENST00000477836 KCNA3P22001 575 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms