RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 SMC5Q8IY18 1101 aa13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 API5Q9BZZ5 524 aaKnown RBP13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 CHMP4BQ9H444 224 aaKnown RBP13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 KDRP35968 1356 aa13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 CRB1P82279 1406 aa13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 ZBTB7BO15156 539 aaPredicted RBP13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 SEC24BO95487 1268 aa13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 HOXC9P31274 260 aa13.94□□□□□ -0.18
HLA-DMB-260ENST00000477537 KRT24Q2M2I5 525 aa13.93□□□□□ -0.18
HLA-DMB-260ENST00000477537 RTF1Q92541 710 aaKnown RBP13.93□□□□□ -0.18
HLA-DMB-260ENST00000477537 USP19O94966 1318 aa13.93□□□□□ -0.18
HLA-DMB-260ENST00000477537 KIF24Q5T7B8 1368 aa13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 DAXXQ9UER7 740 aaPredicted RBP13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 ADGRL3Q9HAR2 1447 aa13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 KIAA0232Q92628 1395 aa13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 HAP1P54257 671 aaPredicted RBP13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 GAS2L2Q8NHY3 880 aa13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 C1orf115Q9H7X2 142 aa13.92□□□□□ -0.18
HLA-DMB-260ENST00000477537 SLC4A3P48751 1232 aa13.91□□□□□ -0.18
HLA-DMB-260ENST00000477537 LTBP4Q8N2S1 1624 aa13.91□□□□□ -0.18
HLA-DMB-260ENST00000477537 LTV1Q96GA3 475 aaPredicted RBP13.9□□□□□ -0.18
HLA-DMB-260ENST00000477537 MIS18AQ9NYP9 233 aa13.9□□□□□ -0.18
HLA-DMB-260ENST00000477537 LTN1O94822 1766 aa13.9□□□□□ -0.18
HLA-DMB-260ENST00000477537 NUCB1Q02818 461 aa13.9□□□□□ -0.18
HLA-DMB-260ENST00000477537 ESCO1Q5FWF5 840 aa13.9□□□□□ -0.18
HLA-DMB-260ENST00000477537 TSPYL4Q9UJ04 414 aa13.89□□□□□ -0.19
HLA-DMB-260ENST00000477537 PSME1Q06323 249 aa13.88□□□□□ -0.19
HLA-DMB-260ENST00000477537 RTL1A6NKG5 1358 aa13.88□□□□□ -0.19
HLA-DMB-260ENST00000477537 C19orf44Q9H6X5 657 aa13.88□□□□□ -0.19
HLA-DMB-260ENST00000477537 HTATSF1O43719 755 aaKnown RBP13.87□□□□□ -0.19
HLA-DMB-260ENST00000477537 CHD1LQ86WJ1 897 aa13.87□□□□□ -0.19
HLA-DMB-260ENST00000477537 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
HLA-DMB-260ENST00000477537 LNPKQ9C0E8 428 aa13.87□□□□□ -0.19
HLA-DMB-260ENST00000477537 UPF2Q9HAU5 1272 aaKnown RBP13.87□□□□□ -0.19
HLA-DMB-260ENST00000477537 GNAT3A8MTJ3 354 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 RTL5Q5HYW3 569 aaPredicted RBP13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 INTS3Q68E01 1043 aaKnown RBP13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 GCC1Q96CN9 775 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 RGS12O14924 1447 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 NFAT5O94916 1531 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 LRRC37A3O60309 1634 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 ADRA2BP18089 450 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 SIRT2Q8IXJ6 389 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 USHBP1Q8N6Y0 703 aa13.86□□□□□ -0.19
HLA-DMB-260ENST00000477537 PTPRCP08575 1304 aa13.85□□□□□ -0.19
HLA-DMB-260ENST00000477537 MSH6P52701 1360 aa13.85□□□□□ -0.19
HLA-DMB-260ENST00000477537 ANKRD45Q5TZF3 282 aa13.85□□□□□ -0.19
HLA-DMB-260ENST00000477537 IP6K1Q92551 441 aa13.85□□□□□ -0.19
HLA-DMB-260ENST00000477537 MAP3K5Q99683 1374 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 ZBTB7CA1YPR0 619 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 SLC4A2P04920 1241 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 ATF3P18847 181 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 TBC1D32Q96NH3 1257 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 ORAI2Q96SN7 254 aa13.84□□□□□ -0.19
HLA-DMB-260ENST00000477537 KCNH5Q8NCM2 988 aa13.83□□□□□ -0.2
HLA-DMB-260ENST00000477537 XPCQ01831 940 aaPredicted RBP13.82□□□□□ -0.2
HLA-DMB-260ENST00000477537 MST1RQ04912 1400 aa13.82□□□□□ -0.2
HLA-DMB-260ENST00000477537 NCOA3Q9Y6Q9 1424 aa13.82□□□□□ -0.2
HLA-DMB-260ENST00000477537 IL17REQ8NFR9 667 aa13.82□□□□□ -0.2
HLA-DMB-260ENST00000477537 NBPF6Q5VWK0 638 aa13.81□□□□□ -0.2
HLA-DMB-260ENST00000477537 G2E3Q7L622 706 aa13.81□□□□□ -0.2
HLA-DMB-260ENST00000477537 NBPF4Q96M43 638 aa13.81□□□□□ -0.2
HLA-DMB-260ENST00000477537 RGPD2P0DJD1 1756 aa13.81□□□□□ -0.2
HLA-DMB-260ENST00000477537 C1orf167Q5SNV9 1468 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 PLEKHG5O94827 1062 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 MFAP1P55081 439 aaKnown RBP13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 BECN1Q14457 450 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 CADPS2Q86UW7 1296 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 DDX17Q92841 729 aaKnown RBP13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 PHRF1Q9P1Y6 1649 aaKnown RBP13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 TAF7Q15545 349 aaPredicted RBP13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 STK31Q9BXU1 1019 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 DCCP43146 1447 aa13.8□□□□□ -0.2
HLA-DMB-260ENST00000477537 LMOD2Q6P5Q4 547 aa13.79□□□□□ -0.2
HLA-DMB-260ENST00000477537 ANKRD44Q8N8A2 993 aa13.79□□□□□ -0.2
HLA-DMB-260ENST00000477537 FAM208AQ9UK61 1670 aaKnown RBP13.79□□□□□ -0.2
HLA-DMB-260ENST00000477537 ATP10DQ9P241 1426 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 MEIS3Q99687 375 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 BABAM1Q9NWV8 329 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 SLIT3O75094 1523 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 F6X3S4 739 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 GCP02774 474 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 DEKP35659 375 aaKnown RBP13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 BMP2KLQ5H9B9 411 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 CCDC30Q5VVM6 783 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 CEP85Q6P2H3 762 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 SLC4A10Q6U841 1118 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 RPAP2Q8IXW5 612 aaPredicted RBP13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 LRRC59Q96AG4 307 aaKnown RBP13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 C22orf23Q9BZE7 217 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 DCTPP1Q9H773 170 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 USP35Q9P2H5 1018 aa13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 TRPM3Q9HCF6 1732 aaPredicted RBP13.78□□□□□ -0.2
HLA-DMB-260ENST00000477537 CCT4P50991 539 aaKnown RBP13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 KRT28Q7Z3Y7 464 aa13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 NECTIN2Q92692 538 aa13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 SLAIN2Q9P270 581 aa13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 KIF1AQ12756 1690 aa13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 CACNA1FO60840 1977 aa13.77□□□□□ -0.21
HLA-DMB-260ENST00000477537 ARHGEF25Q86VW2 580 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms