RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-220ENST00000477528 SPG7Q9UQ90 795 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 TET3O43151 1660 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 SMARCA5O60264 1052 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-220ENST00000477528 EIF4A2Q14240 407 aaKnown RBP17.67■□□□□ 0.42
HDAC6-220ENST00000477528 ZMYM3Q14202 1370 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 VPS37CA5D8V6 355 aaPredicted RBP17.67■□□□□ 0.42
HDAC6-220ENST00000477528 VAMP4O75379 141 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 MBD3O95983 291 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 PHACTR3Q96KR7 559 aa17.67■□□□□ 0.42
HDAC6-220ENST00000477528 C8orf58Q8NAV2 365 aa17.66■□□□□ 0.42
HDAC6-220ENST00000477528 CFAP65Q6ZU64 1925 aaKnown RBP17.66■□□□□ 0.42
HDAC6-220ENST00000477528 MX1P20591 662 aa17.66■□□□□ 0.42
HDAC6-220ENST00000477528 IL1RAPL2Q9NP60 686 aa17.66■□□□□ 0.42
HDAC6-220ENST00000477528 FLIIQ13045 1269 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 AMOTQ4VCS5 1084 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 CDC42BPBQ9Y5S2 1711 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 ZBTB40Q9NUA8 1239 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 SF3A1Q15459 793 aaKnown RBP17.65■□□□□ 0.42
HDAC6-220ENST00000477528 AEBP1Q8IUX7 1158 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 USHBP1Q8N6Y0 703 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 NEUROD6Q96NK8 337 aa17.65■□□□□ 0.42
HDAC6-220ENST00000477528 RAB11FIP3O75154 756 aa17.64■□□□□ 0.42
HDAC6-220ENST00000477528 NASPP49321 788 aaPredicted RBP17.64■□□□□ 0.42
HDAC6-220ENST00000477528 XPCQ01831 940 aaPredicted RBP17.64■□□□□ 0.42
HDAC6-220ENST00000477528 TBC1D9Q6ZT07 1266 aa17.64■□□□□ 0.42
HDAC6-220ENST00000477528 EDC4Q6P2E9 1401 aaKnown RBP17.64■□□□□ 0.41
HDAC6-220ENST00000477528 TPM4P67936 248 aa17.64■□□□□ 0.41
HDAC6-220ENST00000477528 CAVIN1Q6NZI2 390 aaKnown RBP17.64■□□□□ 0.41
HDAC6-220ENST00000477528 SMC5Q8IY18 1101 aa17.64■□□□□ 0.41
HDAC6-220ENST00000477528 TRIM35Q9UPQ4 493 aa17.64■□□□□ 0.41
HDAC6-220ENST00000477528 PRPF40AO75400 957 aaKnown RBP17.64■□□□□ 0.41
HDAC6-220ENST00000477528 TRMT2AQ8IZ69 625 aaKnown RBP17.64■□□□□ 0.41
HDAC6-220ENST00000477528 ZNF521Q96K83 1311 aa17.63■□□□□ 0.41
HDAC6-220ENST00000477528 KIF1BPQ96EK5 621 aa17.63■□□□□ 0.41
HDAC6-220ENST00000477528 KIF1BO60333 1816 aa17.63■□□□□ 0.41
HDAC6-220ENST00000477528 TSPYL6Q8N831 410 aa17.62■□□□□ 0.41
HDAC6-220ENST00000477528 TOMM22Q9NS69 142 aa17.61■□□□□ 0.41
HDAC6-220ENST00000477528 CABP4P57796 275 aa17.61■□□□□ 0.41
HDAC6-220ENST00000477528 MAP4K4O95819 1239 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-220ENST00000477528 IL13P35225 146 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 TTC22Q5TAA0 569 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 LRRFIP2Q9Y608 721 aaKnown RBP17.6■□□□□ 0.41
HDAC6-220ENST00000477528 ANKRD44Q8N8A2 993 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 YEATS2Q9ULM3 1422 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 GTF2E1P29083 439 aaPredicted RBP17.6■□□□□ 0.41
HDAC6-220ENST00000477528 ZC3H6P61129 1189 aaKnown RBP17.6■□□□□ 0.41
HDAC6-220ENST00000477528 CPLX2Q6PUV4 134 aaKnown RBP17.6■□□□□ 0.41
HDAC6-220ENST00000477528 NUTM1Q86Y26 1132 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 IL27Q8NEV9 243 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 CCDC34Q96HJ3 373 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 FLT4P35916 1363 aa17.6■□□□□ 0.41
HDAC6-220ENST00000477528 MYL6BP14649 208 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 AACSQ86V21 672 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 NCKAP5LQ9HCH0 1330 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 DNAAF4Q8WXU2 420 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 CYP46A1Q9Y6A2 500 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 EFCAB6Q5THR3 1501 aa17.59■□□□□ 0.41
HDAC6-220ENST00000477528 CLTCL1P53675 1640 aa17.58■□□□□ 0.41
HDAC6-220ENST00000477528 WDR33Q9C0J8 1336 aaKnown RBP17.58■□□□□ 0.4
HDAC6-220ENST00000477528 FOXO3O43524 673 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 SIL1Q9H173 461 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 PDCP20941 246 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 SYTL4Q96C24 671 aaPredicted RBP17.58■□□□□ 0.4
HDAC6-220ENST00000477528 HECW2Q9P2P5 1572 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 PIK3R4Q99570 1358 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 MEIS3Q99687 375 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 GRPEL1Q9HAV7 217 aa17.58■□□□□ 0.4
HDAC6-220ENST00000477528 BICD2Q8TD16 824 aa17.57■□□□□ 0.4
HDAC6-220ENST00000477528 DNAJC2Q99543 621 aaKnown RBP17.57■□□□□ 0.4
HDAC6-220ENST00000477528 DBF4Q9UBU7 674 aaPredicted RBP17.57■□□□□ 0.4
HDAC6-220ENST00000477528 GLRX3O76003 335 aaKnown RBP17.57■□□□□ 0.4
HDAC6-220ENST00000477528 TRDNQ13061 729 aa17.57■□□□□ 0.4
HDAC6-220ENST00000477528 CPLX1O14810 134 aa17.57■□□□□ 0.4
HDAC6-220ENST00000477528 MPRIPQ6WCQ1 1025 aa17.57■□□□□ 0.4
HDAC6-220ENST00000477528 GOLGA6L19H0YKK7 550 aa17.56■□□□□ 0.4
HDAC6-220ENST00000477528 CWC27Q6UX04 472 aaKnown RBP17.56■□□□□ 0.4
HDAC6-220ENST00000477528 MTHFSDQ2M296 383 aaKnown RBP17.56■□□□□ 0.4
HDAC6-220ENST00000477528 MAP3K4Q9Y6R4 1608 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 APPP05067 770 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 FAM43AQ8N2R8 423 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 SEC24BO95487 1268 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 RBM33Q96EV2 1170 aaKnown RBP17.55■□□□□ 0.4
HDAC6-220ENST00000477528 TOM1L2Q6ZVM7 507 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 ZBTB7BO15156 539 aaPredicted RBP17.55■□□□□ 0.4
HDAC6-220ENST00000477528 WASHC4Q2M389 1173 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 SYNE3Q6ZMZ3 975 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 TBX22Q9Y458 520 aa17.55■□□□□ 0.4
HDAC6-220ENST00000477528 LETM1O95202 739 aaPredicted RBP17.54■□□□□ 0.4
HDAC6-220ENST00000477528 LARP1Q6PKG0 1096 aaKnown RBP17.54■□□□□ 0.4
HDAC6-220ENST00000477528 BECN2A8MW95 431 aa17.54■□□□□ 0.4
HDAC6-220ENST00000477528 ANKRD1Q15327 319 aa17.54■□□□□ 0.4
HDAC6-220ENST00000477528 DCTPP1Q9H773 170 aa17.54■□□□□ 0.4
HDAC6-220ENST00000477528 SPHKAPQ2M3C7 1700 aa17.54■□□□□ 0.4
HDAC6-220ENST00000477528 CDK11BP21127 795 aaKnown RBP17.54■□□□□ 0.4
HDAC6-220ENST00000477528 CCDC173Q0VFZ6 552 aa17.54■□□□□ 0.4
HDAC6-220ENST00000477528 TNPO1Q92973 898 aaKnown RBP17.54■□□□□ 0.4
HDAC6-220ENST00000477528 SIRT1Q96EB6 747 aa17.53■□□□□ 0.4
HDAC6-220ENST00000477528 PRDM11Q9NQV5 511 aa17.53■□□□□ 0.4
HDAC6-220ENST00000477528 HYPKQ9NX55 129 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms