RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 TMEM57Q8N5G2 664 aa20.83■□□□□ 0.93
TMEM53-208ENST00000476724 UPF2Q9HAU5 1272 aaKnown RBP20.83■□□□□ 0.93
TMEM53-208ENST00000476724 NFAT5O94916 1531 aa20.83■□□□□ 0.92
TMEM53-208ENST00000476724 KRT28Q7Z3Y7 464 aa20.82■□□□□ 0.92
TMEM53-208ENST00000476724 DDX17Q92841 729 aaKnown RBP20.82■□□□□ 0.92
TMEM53-208ENST00000476724 VAMP4O75379 141 aa20.82■□□□□ 0.92
TMEM53-208ENST00000476724 HOXC9P31274 260 aa20.81■□□□□ 0.92
TMEM53-208ENST00000476724 MSH6P52701 1360 aa20.81■□□□□ 0.92
TMEM53-208ENST00000476724 SMC5Q8IY18 1101 aa20.81■□□□□ 0.92
TMEM53-208ENST00000476724 CFAP44Q96MT7 982 aa20.81■□□□□ 0.92
TMEM53-208ENST00000476724 PLEKHG5O94827 1062 aa20.8■□□□□ 0.92
TMEM53-208ENST00000476724 CADPS2Q86UW7 1296 aa20.8■□□□□ 0.92
TMEM53-208ENST00000476724 SLC4A3P48751 1232 aa20.79■□□□□ 0.92
TMEM53-208ENST00000476724 SEC24BO95487 1268 aa20.79■□□□□ 0.92
TMEM53-208ENST00000476724 LMOD2Q6P5Q4 547 aa20.79■□□□□ 0.92
TMEM53-208ENST00000476724 BECN1Q14457 450 aa20.78■□□□□ 0.92
TMEM53-208ENST00000476724 MRPL50Q8N5N7 158 aaKnown RBP20.78■□□□□ 0.92
TMEM53-208ENST00000476724 ALS2Q96Q42 1657 aa20.78■□□□□ 0.92
TMEM53-208ENST00000476724 MBIPQ9NS73 344 aa20.77■□□□□ 0.92
TMEM53-208ENST00000476724 KIF24Q5T7B8 1368 aa20.77■□□□□ 0.92
TMEM53-208ENST00000476724 EYA1Q99502 592 aa20.77■□□□□ 0.92
TMEM53-208ENST00000476724 ARHGEF10O15013 1369 aa20.77■□□□□ 0.92
TMEM53-208ENST00000476724 SLIT3O75094 1523 aa20.76■□□□□ 0.91
TMEM53-208ENST00000476724 THUMPD2Q9BTF0 503 aaKnown RBP20.76■□□□□ 0.91
TMEM53-208ENST00000476724 IGSF1Q8N6C5 1336 aa20.75■□□□□ 0.91
TMEM53-208ENST00000476724 HAP1P54257 671 aaPredicted RBP20.74■□□□□ 0.91
TMEM53-208ENST00000476724 LTV1Q96GA3 475 aaPredicted RBP20.74■□□□□ 0.91
TMEM53-208ENST00000476724 ZBTB7CA1YPR0 619 aa20.74■□□□□ 0.91
TMEM53-208ENST00000476724 FAM83GA6ND36 823 aa20.74■□□□□ 0.91
TMEM53-208ENST00000476724 GCP02774 474 aa20.74■□□□□ 0.91
TMEM53-208ENST00000476724 TWISTNBQ3B726 338 aaPredicted RBP20.74■□□□□ 0.91
TMEM53-208ENST00000476724 KCNH5Q8NCM2 988 aa20.74■□□□□ 0.91
TMEM53-208ENST00000476724 TBC1D32Q96NH3 1257 aa20.74■□□□□ 0.91
TMEM53-208ENST00000476724 RTL1A6NKG5 1358 aa20.73■□□□□ 0.91
TMEM53-208ENST00000476724 NFKBIBQ15653 356 aa20.73■□□□□ 0.91
TMEM53-208ENST00000476724 KDRP35968 1356 aa20.73■□□□□ 0.91
TMEM53-208ENST00000476724 PHRF1Q9P1Y6 1649 aaKnown RBP20.73■□□□□ 0.91
TMEM53-208ENST00000476724 ZBTB7BO15156 539 aaPredicted RBP20.73■□□□□ 0.91
TMEM53-208ENST00000476724 TSPYL6Q8N831 410 aa20.73■□□□□ 0.91
TMEM53-208ENST00000476724 IP6K1Q92551 441 aa20.72■□□□□ 0.91
TMEM53-208ENST00000476724 MED1Q15648 1581 aaPredicted RBP20.72■□□□□ 0.91
TMEM53-208ENST00000476724 API5Q9BZZ5 524 aaKnown RBP20.71■□□□□ 0.91
TMEM53-208ENST00000476724 RGPD2P0DJD1 1756 aa20.71■□□□□ 0.91
TMEM53-208ENST00000476724 NUCB1Q02818 461 aa20.71■□□□□ 0.91
TMEM53-208ENST00000476724 DCTN1Q14203 1278 aa20.71■□□□□ 0.91
TMEM53-208ENST00000476724 ABCC4O15439 1325 aa20.7■□□□□ 0.9
TMEM53-208ENST00000476724 PXDNQ92626 1479 aa20.7■□□□□ 0.9
TMEM53-208ENST00000476724 BRINP3Q76B58 766 aa20.69■□□□□ 0.9
TMEM53-208ENST00000476724 GCC1Q96CN9 775 aa20.69■□□□□ 0.9
TMEM53-208ENST00000476724 NPHP3Q7Z494 1330 aa20.69■□□□□ 0.9
TMEM53-208ENST00000476724 ARHGEF25Q86VW2 580 aa20.69■□□□□ 0.9
TMEM53-208ENST00000476724 C8orf58Q8NAV2 365 aa20.68■□□□□ 0.9
TMEM53-208ENST00000476724 USHBP1Q8N6Y0 703 aa20.68■□□□□ 0.9
TMEM53-208ENST00000476724 RGPD5Q99666 1765 aa20.67■□□□□ 0.9
TMEM53-208ENST00000476724 MTHFSDQ2M296 383 aaKnown RBP20.67■□□□□ 0.9
TMEM53-208ENST00000476724 ELL2O00472 640 aaPredicted RBP20.66■□□□□ 0.9
TMEM53-208ENST00000476724 CHD1LQ86WJ1 897 aa20.66■□□□□ 0.9
TMEM53-208ENST00000476724 BCL11AQ9H165 835 aa20.66■□□□□ 0.9
TMEM53-208ENST00000476724 SLAIN2Q9P270 581 aa20.66■□□□□ 0.9
TMEM53-208ENST00000476724 TNS3Q68CZ2 1445 aa20.66■□□□□ 0.9
TMEM53-208ENST00000476724 CHL1O00533 1208 aa20.65■□□□□ 0.9
TMEM53-208ENST00000476724 KIAA0232Q92628 1395 aa20.65■□□□□ 0.9
TMEM53-208ENST00000476724 CRYBG1Q9Y4K1 1723 aa20.64■□□□□ 0.89
TMEM53-208ENST00000476724 NBPF6Q5VWK0 638 aa20.64■□□□□ 0.89
TMEM53-208ENST00000476724 MCM10Q7L590 875 aa20.64■□□□□ 0.89
TMEM53-208ENST00000476724 NBPF4Q96M43 638 aa20.64■□□□□ 0.89
TMEM53-208ENST00000476724 ZC3H6P61129 1189 aaKnown RBP20.63■□□□□ 0.89
TMEM53-208ENST00000476724 CABLES1Q8TDN4 633 aa20.63■□□□□ 0.89
TMEM53-208ENST00000476724 LRRC59Q96AG4 307 aaKnown RBP20.63■□□□□ 0.89
TMEM53-208ENST00000476724 AXIN2Q9Y2T1 843 aa20.63■□□□□ 0.89
TMEM53-208ENST00000476724 SPATA31A3Q5VYP0 1347 aa20.62■□□□□ 0.89
TMEM53-208ENST00000476724 C22orf23Q9BZE7 217 aa20.62■□□□□ 0.89
TMEM53-208ENST00000476724 LNPKQ9C0E8 428 aa20.6■□□□□ 0.89
TMEM53-208ENST00000476724 BMP2KLQ5H9B9 411 aa20.6■□□□□ 0.89
TMEM53-208ENST00000476724 INTS3Q68E01 1043 aaKnown RBP20.6■□□□□ 0.89
TMEM53-208ENST00000476724 ANKRD24Q8TF21 1146 aa20.59■□□□□ 0.89
TMEM53-208ENST00000476724 ANKRD45Q5TZF3 282 aa20.58■□□□□ 0.89
TMEM53-208ENST00000476724 MFAP1P55081 439 aaKnown RBP20.58■□□□□ 0.88
TMEM53-208ENST00000476724 GSE1Q14687 1217 aa20.58■□□□□ 0.88
TMEM53-208ENST00000476724 GAS2L2Q8NHY3 880 aa20.58■□□□□ 0.88
TMEM53-208ENST00000476724 TBC1D2Q9BYX2 928 aa20.58■□□□□ 0.88
TMEM53-208ENST00000476724 COL18A1P39060 1754 aa20.58■□□□□ 0.88
TMEM53-208ENST00000476724 PTPRCP08575 1304 aa20.58■□□□□ 0.88
TMEM53-208ENST00000476724 CRB1P82279 1406 aa20.57■□□□□ 0.88
TMEM53-208ENST00000476724 SOS2Q07890 1332 aaPredicted RBP20.56■□□□□ 0.88
TMEM53-208ENST00000476724 CAMTA1Q9Y6Y1 1673 aa20.56■□□□□ 0.88
TMEM53-208ENST00000476724 SIRT2Q8IXJ6 389 aa20.56■□□□□ 0.88
TMEM53-208ENST00000476724 FRAT2O75474 233 aaPredicted RBP20.55■□□□□ 0.88
TMEM53-208ENST00000476724 RTF1Q92541 710 aaKnown RBP20.55■□□□□ 0.88
TMEM53-208ENST00000476724 ANTXR1Q9H6X2 564 aa20.55■□□□□ 0.88
TMEM53-208ENST00000476724 C1orf115Q9H7X2 142 aa20.55■□□□□ 0.88
TMEM53-208ENST00000476724 NHSL1Q5SYE7 1610 aa20.54■□□□□ 0.88
TMEM53-208ENST00000476724 NCAPD2Q15021 1401 aa20.54■□□□□ 0.88
TMEM53-208ENST00000476724 LRRC37A3O60309 1634 aa20.54■□□□□ 0.88
TMEM53-208ENST00000476724 HTATSF1O43719 755 aaKnown RBP20.54■□□□□ 0.88
TMEM53-208ENST00000476724 EIF5BO60841 1220 aaKnown RBP20.54■□□□□ 0.88
TMEM53-208ENST00000476724 RBM25P49756 843 aaKnown RBP20.54■□□□□ 0.88
TMEM53-208ENST00000476724 CHRNA2Q15822 529 aa20.53■□□□□ 0.88
TMEM53-208ENST00000476724 RPAP2Q8IXW5 612 aaPredicted RBP20.53■□□□□ 0.88
TMEM53-208ENST00000476724 ERBB3P21860 1342 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms