RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 PRKRIP1Q9H875 184 aaPredicted RBP22.85■■□□□ 1.25
SCAF11-206ENST00000474828 RAPGEF4Q8WZA2 1011 aa22.84■■□□□ 1.25
SCAF11-206ENST00000474828 CNGB1Q14028 1251 aaPredicted RBP22.83■■□□□ 1.25
SCAF11-206ENST00000474828 ZCRB1Q8TBF4 217 aaKnown RBP22.83■■□□□ 1.25
SCAF11-206ENST00000474828 TATP17735 454 aaPredicted RBP22.82■■□□□ 1.24
SCAF11-206ENST00000474828 MYBBP1AQ9BQG0 1328 aaKnown RBP22.82■■□□□ 1.24
SCAF11-206ENST00000474828 CFAP53Q96M91 514 aa22.81■■□□□ 1.24
SCAF11-206ENST00000474828 FAM182BQ5T319 152 aa22.8■■□□□ 1.24
SCAF11-206ENST00000474828 AEBP1Q8IUX7 1158 aa22.79■■□□□ 1.24
SCAF11-206ENST00000474828 SULT6B1Q6IMI4 303 aa22.77■■□□□ 1.24
SCAF11-206ENST00000474828 SBF2Q86WG5 1849 aa22.77■■□□□ 1.24
SCAF11-206ENST00000474828 NKX1-1Q15270 411 aaPredicted RBP22.76■■□□□ 1.23
SCAF11-206ENST00000474828 TNS1Q9HBL0 1735 aaKnown RBP22.76■■□□□ 1.23
SCAF11-206ENST00000474828 PCDH11XQ9BZA7 1347 aa22.76■■□□□ 1.23
SCAF11-206ENST00000474828 PCDH11YQ9BZA8 1340 aa22.76■■□□□ 1.23
SCAF11-206ENST00000474828 CYP27B1O15528 508 aa22.75■■□□□ 1.23
SCAF11-206ENST00000474828 SPG7Q9UQ90 795 aa22.75■■□□□ 1.23
SCAF11-206ENST00000474828 AMOTQ4VCS5 1084 aa22.74■■□□□ 1.23
SCAF11-206ENST00000474828 NUDCQ9Y266 331 aa22.73■■□□□ 1.23
SCAF11-206ENST00000474828 NHSQ6T4R5 1651 aa22.72■■□□□ 1.23
SCAF11-206ENST00000474828 BCL11BQ9C0K0 894 aaPredicted RBP22.72■■□□□ 1.23
SCAF11-206ENST00000474828 DDX54Q8TDD1 881 aaKnown RBP22.71■■□□□ 1.23
SCAF11-206ENST00000474828 RSPH6AQ9H0K4 717 aa22.71■■□□□ 1.23
SCAF11-206ENST00000474828 FCHSD2O94868 740 aa22.7■■□□□ 1.22
SCAF11-206ENST00000474828 PHKG2P15735 406 aa22.7■■□□□ 1.22
SCAF11-206ENST00000474828 PLEKHO1Q53GL0 409 aaPredicted RBP22.7■■□□□ 1.22
SCAF11-206ENST00000474828 TRIM37O94972 964 aa22.69■■□□□ 1.22
SCAF11-206ENST00000474828 HMOX1P09601 288 aa22.69■■□□□ 1.22
SCAF11-206ENST00000474828 IFNL2Q8IZJ0 200 aa22.68■■□□□ 1.22
SCAF11-206ENST00000474828 U2SURPO15042 1029 aaKnown RBP22.67■■□□□ 1.22
SCAF11-206ENST00000474828 RGPD3A6NKT7 1758 aaPredicted RBP22.67■■□□□ 1.22
SCAF11-206ENST00000474828 RGPD4Q7Z3J3 1758 aa22.67■■□□□ 1.22
SCAF11-206ENST00000474828 PLSCR1O15162 318 aa22.65■■□□□ 1.22
SCAF11-206ENST00000474828 PTF1AQ7RTS3 328 aa22.65■■□□□ 1.22
SCAF11-206ENST00000474828 TOGARAM1Q9Y4F4 1720 aa22.65■■□□□ 1.22
SCAF11-206ENST00000474828 ADAMTS7Q9UKP4 1686 aa22.65■■□□□ 1.22
SCAF11-206ENST00000474828 KCNQ2O43526 872 aa22.64■■□□□ 1.21
SCAF11-206ENST00000474828 U2AF1L5P0DN76 240 aaPredicted RBP22.64■■□□□ 1.21
SCAF11-206ENST00000474828 U2AF1Q01081 240 aaKnown RBP eCLIP22.64■■□□□ 1.21
SCAF11-206ENST00000474828 DOT1LQ8TEK3 1739 aa22.64■■□□□ 1.21
SCAF11-206ENST00000474828 CAMKK2Q96RR4 588 aa22.63■■□□□ 1.21
SCAF11-206ENST00000474828 ANP32CO43423 234 aa22.62■■□□□ 1.21
SCAF11-206ENST00000474828 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
SCAF11-206ENST00000474828 BAG6P46379 1132 aa22.62■■□□□ 1.21
SCAF11-206ENST00000474828 SF3B2Q13435 895 aaKnown RBP22.62■■□□□ 1.21
SCAF11-206ENST00000474828 MTHFSDQ2M296 383 aaKnown RBP22.62■■□□□ 1.21
SCAF11-206ENST00000474828 ZNF530Q6P9A1 599 aaPredicted RBP22.62■■□□□ 1.21
SCAF11-206ENST00000474828 PLEKHF1Q96S99 279 aa22.62■■□□□ 1.21
SCAF11-206ENST00000474828 KDM6AO15550 1401 aaPredicted RBP22.62■■□□□ 1.21
SCAF11-206ENST00000474828 PRKAR2BP31323 418 aa22.61■■□□□ 1.21
SCAF11-206ENST00000474828 AKAP4Q5JQC9 854 aa22.61■■□□□ 1.21
SCAF11-206ENST00000474828 DCAF5Q96JK2 942 aa22.61■■□□□ 1.21
SCAF11-206ENST00000474828 PHACTR3Q96KR7 559 aa22.61■■□□□ 1.21
SCAF11-206ENST00000474828 APBA3O96018 575 aa22.6■■□□□ 1.21
SCAF11-206ENST00000474828 PRIM1P49642 420 aaKnown RBP22.6■■□□□ 1.21
SCAF11-206ENST00000474828 DEFB132Q7Z7B7 95 aa22.6■■□□□ 1.21
SCAF11-206ENST00000474828 ERVV-2B6SEH9 535 aa22.59■■□□□ 1.21
SCAF11-206ENST00000474828 ACSBG1Q96GR2 724 aa22.59■■□□□ 1.21
SCAF11-206ENST00000474828 BTAF1O14981 1849 aa22.59■■□□□ 1.21
SCAF11-206ENST00000474828 GAS2L2Q8NHY3 880 aa22.58■■□□□ 1.21
SCAF11-206ENST00000474828 RREB1Q92766 1687 aa22.58■■□□□ 1.2
SCAF11-206ENST00000474828 MRC1P22897 1456 aa22.56■■□□□ 1.2
SCAF11-206ENST00000474828 EN1Q05925 392 aaPredicted RBP22.56■■□□□ 1.2
SCAF11-206ENST00000474828 CCDC184Q52MB2 194 aa22.56■■□□□ 1.2
SCAF11-206ENST00000474828 C1orf141Q5JVX7 400 aa22.56■■□□□ 1.2
SCAF11-206ENST00000474828 PNNQ9H307 717 aaKnown RBP22.56■■□□□ 1.2
SCAF11-206ENST00000474828 ITGB4P16144 1822 aa22.56■■□□□ 1.2
SCAF11-206ENST00000474828 PROM2Q8N271 834 aa22.55■■□□□ 1.2
SCAF11-206ENST00000474828 SCN11AQ9UI33 1791 aa22.55■■□□□ 1.2
SCAF11-206ENST00000474828 CEMIPQ8WUJ3 1361 aa22.53■■□□□ 1.2
SCAF11-206ENST00000474828 MAP3K5Q99683 1374 aa22.53■■□□□ 1.2
SCAF11-206ENST00000474828 EZH2Q15910 746 aaKnown RBP22.53■■□□□ 1.2
SCAF11-206ENST00000474828 PIGBQ92521 554 aa22.53■■□□□ 1.2
SCAF11-206ENST00000474828 LY75O60449 1722 aa22.52■■□□□ 1.2
SCAF11-206ENST00000474828 HTATSF1O43719 755 aaKnown RBP22.52■■□□□ 1.2
SCAF11-206ENST00000474828 ADAMTS8Q9UP79 889 aa22.52■■□□□ 1.2
SCAF11-206ENST00000474828 GNAT3A8MTJ3 354 aa22.51■■□□□ 1.19
SCAF11-206ENST00000474828 RNMTO43148 476 aaKnown RBP22.51■■□□□ 1.19
SCAF11-206ENST00000474828 MPRIPQ6WCQ1 1025 aa22.51■■□□□ 1.19
SCAF11-206ENST00000474828 PNISRQ8TF01 805 aaKnown RBP22.51■■□□□ 1.19
SCAF11-206ENST00000474828 LGR6Q9HBX8 967 aa22.5■■□□□ 1.19
SCAF11-206ENST00000474828 NUP188Q5SRE5 1749 aa22.49■■□□□ 1.19
SCAF11-206ENST00000474828 SRCAPQ6ZRS2 3230 aa22.49■■□□□ 1.19
SCAF11-206ENST00000474828 WDR43Q15061 677 aaKnown RBP eCLIP22.49■■□□□ 1.19
SCAF11-206ENST00000474828 IL17REQ8NFR9 667 aa22.49■■□□□ 1.19
SCAF11-206ENST00000474828 SYTL4Q96C24 671 aaPredicted RBP22.49■■□□□ 1.19
SCAF11-206ENST00000474828 TMOD3Q9NYL9 352 aa22.49■■□□□ 1.19
SCAF11-206ENST00000474828 TXNRD1Q16881 649 aa22.48■■□□□ 1.19
SCAF11-206ENST00000474828 SLC52A2Q9HAB3 445 aa22.48■■□□□ 1.19
SCAF11-206ENST00000474828 NFE2L2Q16236 605 aa22.47■■□□□ 1.19
SCAF11-206ENST00000474828 SLC27A3Q5K4L6 730 aa22.47■■□□□ 1.19
SCAF11-206ENST00000474828 PAPPAQ13219 1627 aa22.46■■□□□ 1.19
SCAF11-206ENST00000474828 ZNF831Q5JPB2 1677 aa22.46■■□□□ 1.19
SCAF11-206ENST00000474828 SMARCC1Q92922 1105 aaPredicted RBP22.46■■□□□ 1.19
SCAF11-206ENST00000474828 RUNDC1Q96C34 613 aa22.46■■□□□ 1.19
SCAF11-206ENST00000474828 CABP4P57796 275 aa22.45■■□□□ 1.18
SCAF11-206ENST00000474828 NFATC2IPQ8NCF5 419 aa22.45■■□□□ 1.18
SCAF11-206ENST00000474828 MRS2Q9HD23 443 aa22.45■■□□□ 1.18
SCAF11-206ENST00000474828 ATG3Q9NT62 314 aa22.45■■□□□ 1.18
SCAF11-206ENST00000474828 SIPA1L3O60292 1781 aaPredicted RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms