RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 NLRP2Q9NX02 1062 aa13.38□□□□□ -0.27
VCL-204ENST00000472585 QSER1Q2KHR3 1735 aa13.37□□□□□ -0.27
VCL-204ENST00000472585 NEUROD1Q13562 356 aa13.37□□□□□ -0.27
VCL-204ENST00000472585 SLC12A5Q9H2X9 1139 aa13.37□□□□□ -0.27
VCL-204ENST00000472585 TRPM1Q7Z4N2 1603 aa13.37□□□□□ -0.27
VCL-204ENST00000472585 ROCK2O75116 1388 aaKnown RBP13.36□□□□□ -0.27
VCL-204ENST00000472585 IL2RBP14784 551 aa13.36□□□□□ -0.27
VCL-204ENST00000472585 KCNQ4P56696 695 aa13.36□□□□□ -0.27
VCL-204ENST00000472585 NLGN2Q8NFZ4 835 aa13.36□□□□□ -0.27
VCL-204ENST00000472585 GPBP1L1Q9HC44 474 aaPredicted RBP13.36□□□□□ -0.27
VCL-204ENST00000472585 TFCP2L1Q9NZI6 479 aa13.36□□□□□ -0.27
VCL-204ENST00000472585 HSPA6P17066 643 aa13.35□□□□□ -0.27
VCL-204ENST00000472585 FBLN1P23142 703 aa13.35□□□□□ -0.27
VCL-204ENST00000472585 ANKRD24Q8TF21 1146 aa13.35□□□□□ -0.27
VCL-204ENST00000472585 AKT1S1Q96B36 256 aa13.35□□□□□ -0.27
VCL-204ENST00000472585 ABCC6O95255 1503 aa13.34□□□□□ -0.27
VCL-204ENST00000472585 COL24A1Q17RW2 1714 aa13.34□□□□□ -0.27
VCL-204ENST00000472585 ATP10DQ9P241 1426 aa13.34□□□□□ -0.27
VCL-204ENST00000472585 POLA2Q14181 598 aa13.34□□□□□ -0.27
VCL-204ENST00000472585 SLC27A3Q5K4L6 730 aa13.34□□□□□ -0.27
VCL-204ENST00000472585 YBX3P16989 372 aaKnown RBP eCLIP13.33□□□□□ -0.28
VCL-204ENST00000472585 PNPLA7Q6ZV29 1317 aa13.33□□□□□ -0.28
VCL-204ENST00000472585 TUBGCP6Q96RT7 1819 aa13.32□□□□□ -0.28
VCL-204ENST00000472585 DDX54Q8TDD1 881 aaKnown RBP13.31□□□□□ -0.28
VCL-204ENST00000472585 TMC1Q8TDI8 760 aa13.31□□□□□ -0.28
VCL-204ENST00000472585 ZNF526Q8TF50 670 aaPredicted RBP13.31□□□□□ -0.28
VCL-204ENST00000472585 IP6K1Q92551 441 aa13.31□□□□□ -0.28
VCL-204ENST00000472585 PRIM1P49642 420 aaKnown RBP13.29□□□□□ -0.28
VCL-204ENST00000472585 SYTL4Q96C24 671 aaPredicted RBP13.29□□□□□ -0.28
VCL-204ENST00000472585 LTV1Q96GA3 475 aaPredicted RBP13.29□□□□□ -0.28
VCL-204ENST00000472585 MON2Q7Z3U7 1717 aa13.29□□□□□ -0.28
VCL-204ENST00000472585 A0A1W2PP64 1363 aa13.29□□□□□ -0.28
VCL-204ENST00000472585 CARD11Q9BXL7 1154 aa13.28□□□□□ -0.28
VCL-204ENST00000472585 NSD2O96028 1365 aa13.28□□□□□ -0.28
VCL-204ENST00000472585 USP54Q70EL1 1684 aa13.27□□□□□ -0.29
VCL-204ENST00000472585 LTN1O94822 1766 aa13.27□□□□□ -0.29
VCL-204ENST00000472585 MAP3K19Q56UN5 1328 aa13.26□□□□□ -0.29
VCL-204ENST00000472585 EDC4Q6P2E9 1401 aaKnown RBP13.26□□□□□ -0.29
VCL-204ENST00000472585 HDGFL2Q7Z4V5 671 aaPredicted RBP13.26□□□□□ -0.29
VCL-204ENST00000472585 TESK2Q96S53 571 aa13.26□□□□□ -0.29
VCL-204ENST00000472585 HOXC9P31274 260 aa13.25□□□□□ -0.29
VCL-204ENST00000472585 LY75O60449 1722 aa13.25□□□□□ -0.29
VCL-204ENST00000472585 NBPF6Q5VWK0 638 aa13.24□□□□□ -0.29
VCL-204ENST00000472585 MSL1Q68DK7 614 aa13.24□□□□□ -0.29
VCL-204ENST00000472585 COL23A1Q86Y22 540 aaPredicted RBP13.24□□□□□ -0.29
VCL-204ENST00000472585 NBPF4Q96M43 638 aa13.24□□□□□ -0.29
VCL-204ENST00000472585 TERF2IPQ9NYB0 399 aa13.24□□□□□ -0.29
VCL-204ENST00000472585 CCNL1Q9UK58 526 aaPredicted RBP13.24□□□□□ -0.29
VCL-204ENST00000472585 CD2APQ9Y5K6 639 aa13.24□□□□□ -0.29
VCL-204ENST00000472585 ANKRD36BQ8N2N9 1353 aa13.23□□□□□ -0.29
VCL-204ENST00000472585 APLP1P51693 650 aa13.23□□□□□ -0.29
VCL-204ENST00000472585 ZCRB1Q8TBF4 217 aaKnown RBP13.23□□□□□ -0.29
VCL-204ENST00000472585 PUS7Q96PZ0 661 aaKnown RBP13.23□□□□□ -0.29
VCL-204ENST00000472585 DOT1LQ8TEK3 1739 aa13.22□□□□□ -0.29
VCL-204ENST00000472585 ADCY9O60503 1353 aa13.22□□□□□ -0.29
VCL-204ENST00000472585 USHBP1Q8N6Y0 703 aa13.22□□□□□ -0.29
VCL-204ENST00000472585 MEGF6O75095 1541 aa13.22□□□□□ -0.29
VCL-204ENST00000472585 ST20-MTHFSA0A0A6YYL1 179 aa13.21□□□□□ -0.29
VCL-204ENST00000472585 HMGB2P26583 209 aaKnown RBP13.21□□□□□ -0.29
VCL-204ENST00000472585 RRS1Q15050 365 aaKnown RBP13.21□□□□□ -0.29
VCL-204ENST00000472585 AMIGO3Q86WK7 504 aa13.21□□□□□ -0.29
VCL-204ENST00000472585 USP47Q96K76 1375 aa13.2□□□□□ -0.3
VCL-204ENST00000472585 FLAD1Q8NFF5 587 aa13.2□□□□□ -0.3
VCL-204ENST00000472585 FAM208AQ9UK61 1670 aaKnown RBP13.2□□□□□ -0.3
VCL-204ENST00000472585 FYB1O15117 783 aa13.19□□□□□ -0.3
VCL-204ENST00000472585 AMPHP49418 695 aa13.19□□□□□ -0.3
VCL-204ENST00000472585 SMIM5Q71RC9 77 aa13.19□□□□□ -0.3
VCL-204ENST00000472585 COG3Q96JB2 828 aa13.19□□□□□ -0.3
VCL-204ENST00000472585 KIF3CO14782 793 aa13.18□□□□□ -0.3
VCL-204ENST00000472585 GGNBP2Q9H3C7 697 aa13.18□□□□□ -0.3
VCL-204ENST00000472585 IGSF1Q8N6C5 1336 aa13.17□□□□□ -0.3
VCL-204ENST00000472585 HSP90AB2PQ58FF8 381 aa13.17□□□□□ -0.3
VCL-204ENST00000472585 WWC3Q9ULE0 1092 aa13.17□□□□□ -0.3
VCL-204ENST00000472585 C5P01031 1676 aa13.17□□□□□ -0.3
VCL-204ENST00000472585 RGPD2P0DJD1 1756 aa13.17□□□□□ -0.3
VCL-204ENST00000472585 CYP27B1O15528 508 aa13.15□□□□□ -0.3
VCL-204ENST00000472585 TOMM70O94826 608 aa13.15□□□□□ -0.3
VCL-204ENST00000472585 DNAJC5GQ8N7S2 189 aa13.15□□□□□ -0.3
VCL-204ENST00000472585 TAF1LQ8IZX4 1826 aa13.14□□□□□ -0.31
VCL-204ENST00000472585 AK7Q96M32 723 aa13.13□□□□□ -0.31
VCL-204ENST00000472585 ZBTB12Q9Y330 459 aaPredicted RBP13.13□□□□□ -0.31
VCL-204ENST00000472585 MPRIPQ6WCQ1 1025 aa13.12□□□□□ -0.31
VCL-204ENST00000472585 CARD14Q9BXL6 1004 aa13.12□□□□□ -0.31
VCL-204ENST00000472585 WDR90Q96KV7 1748 aa13.12□□□□□ -0.31
VCL-204ENST00000472585 RTL1A6NKG5 1358 aa13.11□□□□□ -0.31
VCL-204ENST00000472585 PALLDQ8WX93 1383 aa13.11□□□□□ -0.31
VCL-204ENST00000472585 TATP17735 454 aaPredicted RBP13.11□□□□□ -0.31
VCL-204ENST00000472585 COL13A1Q5TAT6 717 aaPredicted RBP13.11□□□□□ -0.31
VCL-204ENST00000472585 C16orf71Q8IYS4 520 aaPredicted RBP13.11□□□□□ -0.31
VCL-204ENST00000472585 RAPGEF4Q8WZA2 1011 aa13.11□□□□□ -0.31
VCL-204ENST00000472585 PIGBQ92521 554 aa13.11□□□□□ -0.31
VCL-204ENST00000472585 CGNL1Q0VF96 1302 aa13.11□□□□□ -0.31
VCL-204ENST00000472585 INSRP06213 1382 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 TONSLQ96HA7 1378 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 PHF14O94880 888 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 TNS4Q8IZW8 715 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 EMILIN1Q9Y6C2 1016 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 NSD3Q9BZ95 1437 aa13.1□□□□□ -0.31
VCL-204ENST00000472585 C4BP0C0L5 1744 aa13.09□□□□□ -0.31
VCL-204ENST00000472585 LINC00116Q8NCU8 138 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms