RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 DNAJB2P25686 324 aa6.81□□□□□ -1.32
SF3B1-208ENST00000470268 GIGYF2Q6Y7W6 1299 aaKnown RBP6.81□□□□□ -1.32
SF3B1-208ENST00000470268 METTL3Q86U44 580 aaKnown RBP6.81□□□□□ -1.32
SF3B1-208ENST00000470268 PHOX2BQ99453 314 aa6.81□□□□□ -1.32
SF3B1-208ENST00000470268 ADGRG1Q9Y653 693 aa6.81□□□□□ -1.32
SF3B1-208ENST00000470268 TONSLQ96HA7 1378 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 ADGRB3O60242 1522 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 PLEKHG3A1L390 1219 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 SLC19A1P41440 591 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 KMT5BQ4FZB7 885 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 RBM46Q8TBY0 533 aaKnown RBP6.8□□□□□ -1.32
SF3B1-208ENST00000470268 PXYLP1Q8TE99 480 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 TIMELESSQ9UNS1 1208 aa6.8□□□□□ -1.32
SF3B1-208ENST00000470268 DGAT1O75907 488 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 REPIN1Q9BWE0 567 aaKnown RBP6.79□□□□□ -1.32
SF3B1-208ENST00000470268 GPCPD1Q9NPB8 672 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 A2ML1A8K2U0 1454 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 TMEM131LA2VDJ0 1609 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 PPP1R15AO75807 674 aaPredicted RBP6.79□□□□□ -1.32
SF3B1-208ENST00000470268 DCAF11Q8TEB1 546 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 NLRP1Q9C000 1473 aa6.79□□□□□ -1.32
SF3B1-208ENST00000470268 NBPF8Q3BBV2 869 aa6.78□□□□□ -1.32
SF3B1-208ENST00000470268 NUTM2DQ5VT03 806 aaPredicted RBP6.78□□□□□ -1.32
SF3B1-208ENST00000470268 ANKLE1Q8NAG6 615 aa6.78□□□□□ -1.32
SF3B1-208ENST00000470268 GOPCQ9HD26 462 aa6.78□□□□□ -1.32
SF3B1-208ENST00000470268 NEURL4Q96JN8 1562 aa6.78□□□□□ -1.32
SF3B1-208ENST00000470268 RNF223E7ERA6 249 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 ACTN4O43707 911 aaKnown RBP6.77□□□□□ -1.32
SF3B1-208ENST00000470268 MS4A1P11836 297 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 PRR20EP86478 221 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 PRR20CP86479 221 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 PRR20DP86480 221 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 PRR20BP86481 221 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 PRR20AP86496 221 aa6.77□□□□□ -1.32
SF3B1-208ENST00000470268 MDM2Q00987 491 aaPredicted RBP6.77□□□□□ -1.32
SF3B1-208ENST00000470268 ZNF326Q5BKZ1 582 aaKnown RBP6.77□□□□□ -1.32
SF3B1-208ENST00000470268 ZNF598Q86UK7 904 aaKnown RBP6.77□□□□□ -1.32
SF3B1-208ENST00000470268 MYO3AQ8NEV4 1616 aa6.77□□□□□ -1.33
SF3B1-208ENST00000470268 ZEB1P37275 1124 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-208ENST00000470268 FAM161AQ3B820 660 aa6.77□□□□□ -1.33
SF3B1-208ENST00000470268 BLOC1S3Q6QNY0 202 aa6.77□□□□□ -1.33
SF3B1-208ENST00000470268 ADGRF5Q8IZF2 1346 aa6.77□□□□□ -1.33
SF3B1-208ENST00000470268 SPRYD7Q5W111 196 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 TMEM134Q9H6X4 195 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 ZFYVE9O95405 1425 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 NEXMIFQ5QGS0 1516 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 CEP170BQ9Y4F5 1589 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-208ENST00000470268 UBR1Q8IWV7 1749 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 LTKP29376 864 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 PKDCCQ504Y2 493 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 TMEM2Q9UHN6 1383 aa6.76□□□□□ -1.33
SF3B1-208ENST00000470268 UHRF1BP1Q6BDS2 1440 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 KIF1BO60333 1816 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 SSTR3P32745 418 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-208ENST00000470268 FAM217BQ9NTX9 383 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-208ENST00000470268 RPGRIP1LQ68CZ1 1315 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 PRAG1Q86YV5 1406 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 RIMS2Q9UQ26 1411 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 MYO5BQ9ULV0 1848 aa6.75□□□□□ -1.33
SF3B1-208ENST00000470268 NR1I2O75469 434 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 TRIM67Q6ZTA4 783 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 THEMISQ8N1K5 641 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-208ENST00000470268 ARHGAP23Q9P227 1491 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 KDM5AP29375 1690 aaKnown RBP6.74□□□□□ -1.33
SF3B1-208ENST00000470268 SLIT1O75093 1534 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 MYOM2P54296 1465 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 LMTK3Q96Q04 1460 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 NRXN1Q9ULB1 1477 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.74□□□□□ -1.33
SF3B1-208ENST00000470268 HSPA2P54652 639 aa6.74□□□□□ -1.33
SF3B1-208ENST00000470268 IFT172Q9UG01 1749 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 ZNF142P52746 1687 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-208ENST00000470268 PIK3C2GO75747 1445 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 ADH1BP00325 375 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 NBPF1Q3BBV0 1214 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 CFAP70Q5T0N1 1121 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 C14orf37Q86TY3 774 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 TXNDC2Q86VQ3 553 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 ZNF775Q96BV0 537 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-208ENST00000470268 PPLO60437 1756 aa6.73□□□□□ -1.33
SF3B1-208ENST00000470268 RCCD1A6NED2 376 aa6.72□□□□□ -1.33
SF3B1-208ENST00000470268 MYT1Q01538 1121 aa6.72□□□□□ -1.33
SF3B1-208ENST00000470268 SETD1BQ9UPS6 1966 aaKnown RBP6.72□□□□□ -1.33
SF3B1-208ENST00000470268 CFHP08603 1231 aa6.72□□□□□ -1.33
SF3B1-208ENST00000470268 ZNF697Q5TEC3 545 aa6.72□□□□□ -1.33
SF3B1-208ENST00000470268 EMID1Q96A84 441 aaPredicted RBP6.72□□□□□ -1.33
SF3B1-208ENST00000470268 S1PR4O95977 384 aa6.71□□□□□ -1.33
SF3B1-208ENST00000470268 SH3D19Q5HYK7 790 aa6.71□□□□□ -1.33
SF3B1-208ENST00000470268 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.71□□□□□ -1.33
SF3B1-208ENST00000470268 NLRP7Q8WX94 980 aa6.71□□□□□ -1.33
SF3B1-208ENST00000470268 BEGAINQ9BUH8 593 aa6.71□□□□□ -1.33
SF3B1-208ENST00000470268 RSPH6AQ9H0K4 717 aa6.71□□□□□ -1.33
SF3B1-208ENST00000470268 C14orf93Q9H972 538 aaKnown RBP6.71□□□□□ -1.33
SF3B1-208ENST00000470268 TLL1O43897 1013 aa6.71□□□□□ -1.34
SF3B1-208ENST00000470268 TMEM132EQ6IEE7 984 aa6.71□□□□□ -1.34
SF3B1-208ENST00000470268 LIAT1Q6ZQX7 453 aa6.71□□□□□ -1.34
SF3B1-208ENST00000470268 RALGAPBQ86X10 1494 aa6.71□□□□□ -1.34
SF3B1-208ENST00000470268 SCAF11Q99590 1463 aaKnown RBP6.71□□□□□ -1.34
SF3B1-208ENST00000470268 ADAMTS13Q76LX8 1427 aa6.7□□□□□ -1.34
SF3B1-208ENST00000470268 PLEKHG1Q9ULL1 1385 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms