RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 MCM10Q7L590 875 aa17.42■□□□□ 0.38
GPC1-208ENST00000469694 TSPYL6Q8N831 410 aa17.42■□□□□ 0.38
GPC1-208ENST00000469694 SBNO1A3KN83 1393 aa17.42■□□□□ 0.38
GPC1-208ENST00000469694 DDX17Q92841 729 aaKnown RBP17.41■□□□□ 0.38
GPC1-208ENST00000469694 GRPEL1Q9HAV7 217 aa17.41■□□□□ 0.38
GPC1-208ENST00000469694 MBIPQ9NS73 344 aa17.41■□□□□ 0.38
GPC1-208ENST00000469694 ERBB4Q15303 1308 aa17.41■□□□□ 0.38
GPC1-208ENST00000469694 HOXC9P31274 260 aa17.41■□□□□ 0.38
GPC1-208ENST00000469694 USHBP1Q8N6Y0 703 aa17.39■□□□□ 0.37
GPC1-208ENST00000469694 ISY1Q9ULR0 285 aaKnown RBP17.39■□□□□ 0.37
GPC1-208ENST00000469694 CHMP5Q9NZZ3 219 aa17.39■□□□□ 0.37
GPC1-208ENST00000469694 KDM4FA0A1W2PPD8 638 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 TPM2P07951 284 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 PDCL3Q9H2J4 239 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 NOB1Q9ULX3 412 aaKnown RBP17.38■□□□□ 0.37
GPC1-208ENST00000469694 TRIM27P14373 513 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 MTHFSDQ2M296 383 aaKnown RBP17.38■□□□□ 0.37
GPC1-208ENST00000469694 KRT24Q2M2I5 525 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 SPRYD3Q8NCJ5 442 aa17.38■□□□□ 0.37
GPC1-208ENST00000469694 TMEM94Q12767 1356 aa17.37■□□□□ 0.37
GPC1-208ENST00000469694 C19orf44Q9H6X5 657 aa17.37■□□□□ 0.37
GPC1-208ENST00000469694 ZKSCAN2Q63HK3 967 aa17.37■□□□□ 0.37
GPC1-208ENST00000469694 C8orf58Q8NAV2 365 aa17.37■□□□□ 0.37
GPC1-208ENST00000469694 MARF1Q9Y4F3 1742 aaKnown RBP17.36■□□□□ 0.37
GPC1-208ENST00000469694 GNAI1P63096 354 aa17.36■□□□□ 0.37
GPC1-208ENST00000469694 MIS18AQ9NYP9 233 aa17.36■□□□□ 0.37
GPC1-208ENST00000469694 ZNF853P0CG23 659 aa17.36■□□□□ 0.37
GPC1-208ENST00000469694 FTSJ3Q8IY81 847 aaKnown RBP17.36■□□□□ 0.37
GPC1-208ENST00000469694 IFT57Q9NWB7 429 aa17.36■□□□□ 0.37
GPC1-208ENST00000469694 DLG5Q8TDM6 1919 aa17.36■□□□□ 0.37
GPC1-208ENST00000469694 CFAP44Q96MT7 982 aa17.35■□□□□ 0.37
GPC1-208ENST00000469694 IGSF1Q8N6C5 1336 aa17.35■□□□□ 0.37
GPC1-208ENST00000469694 CT47B1P0C2W7 299 aaPredicted RBP17.34■□□□□ 0.37
GPC1-208ENST00000469694 LMOD3Q0VAK6 560 aa17.34■□□□□ 0.37
GPC1-208ENST00000469694 VAMP4O75379 141 aa17.34■□□□□ 0.37
GPC1-208ENST00000469694 DZIP1LQ8IYY4 767 aaKnown RBP17.34■□□□□ 0.37
GPC1-208ENST00000469694 PCDHB15Q9Y5E8 787 aa17.34■□□□□ 0.37
GPC1-208ENST00000469694 ARHGEF10O15013 1369 aa17.34■□□□□ 0.37
GPC1-208ENST00000469694 NWD1Q149M9 1564 aa17.34■□□□□ 0.37
GPC1-208ENST00000469694 CALD1Q05682 793 aaKnown RBP17.34■□□□□ 0.37
GPC1-208ENST00000469694 TRIM44Q96DX7 344 aaPredicted RBP17.34■□□□□ 0.37
GPC1-208ENST00000469694 RGPD1P0DJD0 1748 aa17.33■□□□□ 0.37
GPC1-208ENST00000469694 KRT28Q7Z3Y7 464 aa17.33■□□□□ 0.36
GPC1-208ENST00000469694 DDX11L8A8MPP1 907 aa17.33■□□□□ 0.36
GPC1-208ENST00000469694 ATF3P18847 181 aa17.33■□□□□ 0.36
GPC1-208ENST00000469694 C1orf167Q5SNV9 1468 aa17.32■□□□□ 0.36
GPC1-208ENST00000469694 TWISTNBQ3B726 338 aaPredicted RBP17.32■□□□□ 0.36
GPC1-208ENST00000469694 ATF7IPQ6VMQ6 1270 aa17.32■□□□□ 0.36
GPC1-208ENST00000469694 GCP02774 474 aa17.31■□□□□ 0.36
GPC1-208ENST00000469694 MVPQ14764 893 aaKnown RBP17.31■□□□□ 0.36
GPC1-208ENST00000469694 ITPRIPQ8IWB1 547 aa17.31■□□□□ 0.36
GPC1-208ENST00000469694 LRRC59Q96AG4 307 aaKnown RBP17.31■□□□□ 0.36
GPC1-208ENST00000469694 KDRP35968 1356 aa17.31■□□□□ 0.36
GPC1-208ENST00000469694 STRCP1A6NGW2 1772 aa17.31■□□□□ 0.36
GPC1-208ENST00000469694 NBPF6Q5VWK0 638 aa17.3■□□□□ 0.36
GPC1-208ENST00000469694 TMEM57Q8N5G2 664 aa17.3■□□□□ 0.36
GPC1-208ENST00000469694 NBPF4Q96M43 638 aa17.3■□□□□ 0.36
GPC1-208ENST00000469694 PDZRN3Q9UPQ7 1066 aa17.3■□□□□ 0.36
GPC1-208ENST00000469694 AAMPQ13685 434 aa17.3■□□□□ 0.36
GPC1-208ENST00000469694 IP6K1Q92551 441 aa17.29■□□□□ 0.36
GPC1-208ENST00000469694 NFAT5O94916 1531 aa17.28■□□□□ 0.36
GPC1-208ENST00000469694 ZC3H6P61129 1189 aaKnown RBP17.28■□□□□ 0.36
GPC1-208ENST00000469694 RTF1Q92541 710 aaKnown RBP17.28■□□□□ 0.36
GPC1-208ENST00000469694 ALDH1L2Q3SY69 923 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 GAS2L3Q86XJ1 694 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 C22orf23Q9BZE7 217 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 CHL1O00533 1208 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 MRPL50Q8N5N7 158 aaKnown RBP17.27■□□□□ 0.36
GPC1-208ENST00000469694 KCNH5Q8NCM2 988 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 CABLES1Q8TDN4 633 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 AXIN2Q9Y2T1 843 aa17.27■□□□□ 0.36
GPC1-208ENST00000469694 KIAA1211Q6ZU35 1233 aa17.26■□□□□ 0.35
GPC1-208ENST00000469694 KIF16BQ96L93 1317 aa17.26■□□□□ 0.35
GPC1-208ENST00000469694 MST1RQ04912 1400 aa17.26■□□□□ 0.35
GPC1-208ENST00000469694 LTN1O94822 1766 aa17.25■□□□□ 0.35
GPC1-208ENST00000469694 PODXL2Q9NZ53 605 aa17.25■□□□□ 0.35
GPC1-208ENST00000469694 ZNF335Q9H4Z2 1342 aaPredicted RBP17.25■□□□□ 0.35
GPC1-208ENST00000469694 CRB1P82279 1406 aa17.25■□□□□ 0.35
GPC1-208ENST00000469694 ARHGEF25Q86VW2 580 aa17.25■□□□□ 0.35
GPC1-208ENST00000469694 LMTK3Q96Q04 1460 aa17.25■□□□□ 0.35
GPC1-208ENST00000469694 KIF24Q5T7B8 1368 aa17.24■□□□□ 0.35
GPC1-208ENST00000469694 DDIT3P35638 169 aa17.24■□□□□ 0.35
GPC1-208ENST00000469694 GAS2L2Q8NHY3 880 aa17.24■□□□□ 0.35
GPC1-208ENST00000469694 IPO8O15397 1037 aaKnown RBP17.24■□□□□ 0.35
GPC1-208ENST00000469694 TSPYL4Q9UJ04 414 aa17.23■□□□□ 0.35
GPC1-208ENST00000469694 PRDM4Q9UKN5 801 aa17.23■□□□□ 0.35
GPC1-208ENST00000469694 IL17REQ8NFR9 667 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 RWDD1Q9H446 243 aaPredicted RBP17.22■□□□□ 0.35
GPC1-208ENST00000469694 USP54Q70EL1 1684 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 RTL1A6NKG5 1358 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 GNAT3A8MTJ3 354 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 CADPS2Q86UW7 1296 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 HSCBQ8IWL3 235 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 NCOA3Q9Y6Q9 1424 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 DDX19BQ9UMR2 479 aa17.22■□□□□ 0.35
GPC1-208ENST00000469694 OFD1O75665 1012 aa17.21■□□□□ 0.35
GPC1-208ENST00000469694 MFAP1P55081 439 aaKnown RBP17.21■□□□□ 0.35
GPC1-208ENST00000469694 ANKRD24Q8TF21 1146 aa17.21■□□□□ 0.35
GPC1-208ENST00000469694 ZNF428Q96B54 188 aa17.21■□□□□ 0.35
GPC1-208ENST00000469694 C1orf115Q9H7X2 142 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms