RNA–Protein interactions for RNA: ENST00000468454.1

PTPRN-212, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 504 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-212ENST00000468454 ZNF692Q9BU19 519 aaPredicted RBP20.92■□□□□ 0.94
PTPRN-212ENST00000468454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.91■□□□□ 0.94
PTPRN-212ENST00000468454 TTC21AQ8NDW8 1320 aa20.91■□□□□ 0.94
PTPRN-212ENST00000468454 DOT1LQ8TEK3 1739 aa20.9■□□□□ 0.94
PTPRN-212ENST00000468454 EVC2Q86UK5 1308 aa20.9■□□□□ 0.94
PTPRN-212ENST00000468454 ANKRD36BQ8N2N9 1353 aa20.89■□□□□ 0.93
PTPRN-212ENST00000468454 IGSF1Q8N6C5 1336 aa20.89■□□□□ 0.93
PTPRN-212ENST00000468454 SMIM5Q71RC9 77 aa20.89■□□□□ 0.93
PTPRN-212ENST00000468454 LTN1O94822 1766 aa20.89■□□□□ 0.93
PTPRN-212ENST00000468454 KTN1Q86UP2 1357 aaKnown RBP20.88■□□□□ 0.93
PTPRN-212ENST00000468454 NME9Q86XW9 330 aa20.88■□□□□ 0.93
PTPRN-212ENST00000468454 LTV1Q96GA3 475 aaPredicted RBP20.87■□□□□ 0.93
PTPRN-212ENST00000468454 AMIGO3Q86WK7 504 aa20.86■□□□□ 0.93
PTPRN-212ENST00000468454 TOMM70O94826 608 aa20.84■□□□□ 0.93
PTPRN-212ENST00000468454 NMRK2Q9NPI5 230 aa20.83■□□□□ 0.93
PTPRN-212ENST00000468454 USP31Q70CQ4 1352 aa20.83■□□□□ 0.92
PTPRN-212ENST00000468454 TNS4Q8IZW8 715 aa20.82■□□□□ 0.92
PTPRN-212ENST00000468454 WDR90Q96KV7 1748 aa20.81■□□□□ 0.92
PTPRN-212ENST00000468454 PRELPP51888 382 aa20.81■□□□□ 0.92
PTPRN-212ENST00000468454 C5P01031 1676 aa20.8■□□□□ 0.92
PTPRN-212ENST00000468454 KLRG1Q96E93 195 aa20.8■□□□□ 0.92
PTPRN-212ENST00000468454 USP47Q96K76 1375 aa20.8■□□□□ 0.92
PTPRN-212ENST00000468454 MON2Q7Z3U7 1717 aa20.79■□□□□ 0.92
PTPRN-212ENST00000468454 JMYQ8N9B5 988 aa20.78■□□□□ 0.92
PTPRN-212ENST00000468454 USP54Q70EL1 1684 aa20.77■□□□□ 0.92
PTPRN-212ENST00000468454 SBNO2Q9Y2G9 1366 aa20.77■□□□□ 0.92
PTPRN-212ENST00000468454 PHF14O94880 888 aa20.77■□□□□ 0.92
PTPRN-212ENST00000468454 ZCRB1Q8TBF4 217 aaKnown RBP20.77■□□□□ 0.92
PTPRN-212ENST00000468454 L3MBTL2Q969R5 705 aa20.77■□□□□ 0.92
PTPRN-212ENST00000468454 IP6K1Q92551 441 aa20.76■□□□□ 0.91
PTPRN-212ENST00000468454 MEGF6O75095 1541 aa20.76■□□□□ 0.91
PTPRN-212ENST00000468454 TOGARAM1Q9Y4F4 1720 aa20.75■□□□□ 0.91
PTPRN-212ENST00000468454 RGPD2P0DJD1 1756 aa20.75■□□□□ 0.91
PTPRN-212ENST00000468454 FBLN1P23142 703 aa20.75■□□□□ 0.91
PTPRN-212ENST00000468454 CD163L1Q9NR16 1453 aa20.75■□□□□ 0.91
PTPRN-212ENST00000468454 CICQ96RK0 1608 aaPredicted RBP20.75■□□□□ 0.91
PTPRN-212ENST00000468454 FAM208AQ9UK61 1670 aaKnown RBP20.74■□□□□ 0.91
PTPRN-212ENST00000468454 TAF1LQ8IZX4 1826 aa20.74■□□□□ 0.91
PTPRN-212ENST00000468454 ROCK2O75116 1388 aaKnown RBP20.73■□□□□ 0.91
PTPRN-212ENST00000468454 FLAD1Q8NFF5 587 aa20.73■□□□□ 0.91
PTPRN-212ENST00000468454 PALLDQ8WX93 1383 aa20.71■□□□□ 0.91
PTPRN-212ENST00000468454 C4BP0C0L5 1744 aa20.7■□□□□ 0.9
PTPRN-212ENST00000468454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.7■□□□□ 0.9
PTPRN-212ENST00000468454 USHBP1Q8N6Y0 703 aa20.7■□□□□ 0.9
PTPRN-212ENST00000468454 RBM46Q8TBY0 533 aaKnown RBP20.7■□□□□ 0.9
PTPRN-212ENST00000468454 AK7Q96M32 723 aa20.7■□□□□ 0.9
PTPRN-212ENST00000468454 MPRIPQ6WCQ1 1025 aa20.69■□□□□ 0.9
PTPRN-212ENST00000468454 ARHGAP27Q6ZUM4 889 aa20.69■□□□□ 0.9
PTPRN-212ENST00000468454 BCS1LQ9Y276 419 aa20.69■□□□□ 0.9
PTPRN-212ENST00000468454 N4BP2Q86UW6 1770 aaPredicted RBP20.68■□□□□ 0.9
PTPRN-212ENST00000468454 A0A0G2JLW4 131 aa20.68■□□□□ 0.9
PTPRN-212ENST00000468454 TMC1Q8TDI8 760 aa20.68■□□□□ 0.9
PTPRN-212ENST00000468454 PXDNLA1KZ92 1463 aa20.68■□□□□ 0.9
PTPRN-212ENST00000468454 KIAA1551Q9HCM1 1747 aa20.67■□□□□ 0.9
PTPRN-212ENST00000468454 UBR3Q6ZT12 1888 aa20.67■□□□□ 0.9
PTPRN-212ENST00000468454 HOXC9P31274 260 aa20.67■□□□□ 0.9
PTPRN-212ENST00000468454 SLC12A5Q9H2X9 1139 aa20.67■□□□□ 0.9
PTPRN-212ENST00000468454 NBPF6Q5VWK0 638 aa20.66■□□□□ 0.9
PTPRN-212ENST00000468454 NBPF4Q96M43 638 aa20.66■□□□□ 0.9
PTPRN-212ENST00000468454 MAP3K19Q56UN5 1328 aa20.65■□□□□ 0.9
PTPRN-212ENST00000468454 HDGFL2Q7Z4V5 671 aaPredicted RBP20.65■□□□□ 0.9
PTPRN-212ENST00000468454 C16orf71Q8IYS4 520 aaPredicted RBP20.65■□□□□ 0.9
PTPRN-212ENST00000468454 LINC00116Q8NCU8 138 aa20.64■□□□□ 0.89
PTPRN-212ENST00000468454 MMP10P09238 476 aa20.63■□□□□ 0.89
PTPRN-212ENST00000468454 C9orf131Q5VYM1 1079 aa20.63■□□□□ 0.89
PTPRN-212ENST00000468454 FSTL1Q12841 308 aa20.62■□□□□ 0.89
PTPRN-212ENST00000468454 RRAGCQ9HB90 399 aa20.62■□□□□ 0.89
PTPRN-212ENST00000468454 KCPQ6ZWJ8 1503 aa20.62■□□□□ 0.89
PTPRN-212ENST00000468454 HSPA1AP0DMV8 641 aaKnown RBP20.61■□□□□ 0.89
PTPRN-212ENST00000468454 HSPA1BP0DMV9 641 aaKnown RBP20.61■□□□□ 0.89
PTPRN-212ENST00000468454 AMPHP49418 695 aa20.61■□□□□ 0.89
PTPRN-212ENST00000468454 SIN3AQ96ST3 1273 aa20.61■□□□□ 0.89
PTPRN-212ENST00000468454 TERF2IPQ9NYB0 399 aa20.61■□□□□ 0.89
PTPRN-212ENST00000468454 EDC4Q6P2E9 1401 aaKnown RBP20.61■□□□□ 0.89
PTPRN-212ENST00000468454 DPEP1P16444 411 aa20.6■□□□□ 0.89
PTPRN-212ENST00000468454 A0A1W2PP64 1363 aa20.59■□□□□ 0.89
PTPRN-212ENST00000468454 FCHSD2O94868 740 aa20.59■□□□□ 0.89
PTPRN-212ENST00000468454 SSFA2P28290 1259 aa20.59■□□□□ 0.89
PTPRN-212ENST00000468454 NEUROD1Q13562 356 aa20.59■□□□□ 0.89
PTPRN-212ENST00000468454 KIF13BQ9NQT8 1826 aa20.59■□□□□ 0.89
PTPRN-212ENST00000468454 CYP27B1O15528 508 aa20.58■□□□□ 0.89
PTPRN-212ENST00000468454 PIGBQ92521 554 aa20.58■□□□□ 0.89
PTPRN-212ENST00000468454 GNPATO15228 680 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 SLC34A2O95436 690 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 TGFB2P61812 414 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 ITPK1Q13572 414 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 RAPGEF4Q8WZA2 1011 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 PUS7Q96PZ0 661 aaKnown RBP20.57■□□□□ 0.88
PTPRN-212ENST00000468454 ITGB4P16144 1822 aa20.57■□□□□ 0.88
PTPRN-212ENST00000468454 RRS1Q15050 365 aaKnown RBP20.56■□□□□ 0.88
PTPRN-212ENST00000468454 CARD11Q9BXL7 1154 aa20.56■□□□□ 0.88
PTPRN-212ENST00000468454 MAP2P11137 1827 aaKnown RBP20.55■□□□□ 0.88
PTPRN-212ENST00000468454 TATP17735 454 aaPredicted RBP20.55■□□□□ 0.88
PTPRN-212ENST00000468454 SMARCC1Q92922 1105 aaPredicted RBP20.55■□□□□ 0.88
PTPRN-212ENST00000468454 LOC102724428A0A0B4J2F2 783 aa20.54■□□□□ 0.88
PTPRN-212ENST00000468454 KCNA3P22001 575 aa20.54■□□□□ 0.88
PTPRN-212ENST00000468454 SIK1P57059 783 aa20.54■□□□□ 0.88
PTPRN-212ENST00000468454 PCDH11XQ9BZA7 1347 aa20.53■□□□□ 0.88
PTPRN-212ENST00000468454 PCDH11YQ9BZA8 1340 aa20.53■□□□□ 0.88
PTPRN-212ENST00000468454 C10orf71Q711Q0 1435 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms