RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 KDRP35968 1356 aa27.46■■□□□ 1.99
SKA3-205ENST00000465471 CCDC125Q86Z20 511 aa27.45■■□□□ 1.98
SKA3-205ENST00000465471 TATP17735 454 aaPredicted RBP27.44■■□□□ 1.98
SKA3-205ENST00000465471 RALBP1Q15311 655 aa27.43■■□□□ 1.98
SKA3-205ENST00000465471 DIAPH1O60610 1272 aaKnown RBP27.42■■□□□ 1.98
SKA3-205ENST00000465471 ZCRB1Q8TBF4 217 aaKnown RBP27.42■■□□□ 1.98
SKA3-205ENST00000465471 AEBP1Q8IUX7 1158 aa27.39■■□□□ 1.98
SKA3-205ENST00000465471 NHSQ6T4R5 1651 aa27.39■■□□□ 1.97
SKA3-205ENST00000465471 CFAP53Q96M91 514 aa27.38■■□□□ 1.97
SKA3-205ENST00000465471 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.38■■□□□ 1.97
SKA3-205ENST00000465471 PCDH11XQ9BZA7 1347 aa27.37■■□□□ 1.97
SKA3-205ENST00000465471 PCDH11YQ9BZA8 1340 aa27.37■■□□□ 1.97
SKA3-205ENST00000465471 SULT6B1Q6IMI4 303 aa27.36■■□□□ 1.97
SKA3-205ENST00000465471 TRIM37O94972 964 aa27.35■■□□□ 1.97
SKA3-205ENST00000465471 DDX54Q8TDD1 881 aaKnown RBP27.35■■□□□ 1.97
SKA3-205ENST00000465471 DOT1LQ8TEK3 1739 aa27.34■■□□□ 1.97
SKA3-205ENST00000465471 PRKRIP1Q9H875 184 aaPredicted RBP27.34■■□□□ 1.97
SKA3-205ENST00000465471 CYP27B1O15528 508 aa27.33■■□□□ 1.97
SKA3-205ENST00000465471 MYBBP1AQ9BQG0 1328 aaKnown RBP27.33■■□□□ 1.97
SKA3-205ENST00000465471 SPG7Q9UQ90 795 aa27.32■■□□□ 1.96
SKA3-205ENST00000465471 RGPD3A6NKT7 1758 aaPredicted RBP27.31■■□□□ 1.96
SKA3-205ENST00000465471 RGPD4Q7Z3J3 1758 aa27.31■■□□□ 1.96
SKA3-205ENST00000465471 SF3B2Q13435 895 aaKnown RBP27.31■■□□□ 1.96
SKA3-205ENST00000465471 TOGARAM1Q9Y4F4 1720 aa27.3■■□□□ 1.96
SKA3-205ENST00000465471 BCL11BQ9C0K0 894 aaPredicted RBP27.3■■□□□ 1.96
SKA3-205ENST00000465471 HMOX1P09601 288 aa27.28■■□□□ 1.96
SKA3-205ENST00000465471 PTF1AQ7RTS3 328 aa27.28■■□□□ 1.96
SKA3-205ENST00000465471 U2SURPO15042 1029 aaKnown RBP27.27■■□□□ 1.96
SKA3-205ENST00000465471 NKX1-1Q15270 411 aaPredicted RBP27.27■■□□□ 1.96
SKA3-205ENST00000465471 AMOTQ4VCS5 1084 aa27.27■■□□□ 1.96
SKA3-205ENST00000465471 DEFB132Q7Z7B7 95 aa27.27■■□□□ 1.96
SKA3-205ENST00000465471 BTAF1O14981 1849 aa27.27■■□□□ 1.96
SKA3-205ENST00000465471 KCNQ2O43526 872 aa27.26■■□□□ 1.95
SKA3-205ENST00000465471 BAG6P46379 1132 aa27.26■■□□□ 1.95
SKA3-205ENST00000465471 PLEKHO1Q53GL0 409 aaPredicted RBP27.26■■□□□ 1.95
SKA3-205ENST00000465471 NUDCQ9Y266 331 aa27.26■■□□□ 1.95
SKA3-205ENST00000465471 RREB1Q92766 1687 aa27.25■■□□□ 1.95
SKA3-205ENST00000465471 PHKG2P15735 406 aa27.25■■□□□ 1.95
SKA3-205ENST00000465471 ACSBG1Q96GR2 724 aa27.25■■□□□ 1.95
SKA3-205ENST00000465471 IFNL2Q8IZJ0 200 aa27.24■■□□□ 1.95
SKA3-205ENST00000465471 APBA3O96018 575 aa27.23■■□□□ 1.95
SKA3-205ENST00000465471 CAMKK2Q96RR4 588 aa27.22■■□□□ 1.95
SKA3-205ENST00000465471 RSPH6AQ9H0K4 717 aa27.22■■□□□ 1.95
SKA3-205ENST00000465471 ITGB4P16144 1822 aa27.22■■□□□ 1.95
SKA3-205ENST00000465471 KAT6BQ8WYB5 2073 aa27.21■■□□□ 1.95
SKA3-205ENST00000465471 EN1Q05925 392 aaPredicted RBP27.21■■□□□ 1.95
SKA3-205ENST00000465471 PLSCR1O15162 318 aa27.2■■□□□ 1.94
SKA3-205ENST00000465471 ZNF530Q6P9A1 599 aaPredicted RBP27.2■■□□□ 1.94
SKA3-205ENST00000465471 U2AF1L5P0DN76 240 aaPredicted RBP27.19■■□□□ 1.94
SKA3-205ENST00000465471 U2AF1Q01081 240 aaKnown RBP eCLIP27.19■■□□□ 1.94
SKA3-205ENST00000465471 ADAMTS7Q9UKP4 1686 aa27.18■■□□□ 1.94
SKA3-205ENST00000465471 KDM6AO15550 1401 aaPredicted RBP27.18■■□□□ 1.94
SKA3-205ENST00000465471 PRIM1P49642 420 aaKnown RBP27.18■■□□□ 1.94
SKA3-205ENST00000465471 NUP188Q5SRE5 1749 aa27.18■■□□□ 1.94
SKA3-205ENST00000465471 FCHSD2O94868 740 aa27.17■■□□□ 1.94
SKA3-205ENST00000465471 PRKAR2BP31323 418 aa27.16■■□□□ 1.94
SKA3-205ENST00000465471 EZH2Q15910 746 aaKnown RBP27.16■■□□□ 1.94
SKA3-205ENST00000465471 SCN11AQ9UI33 1791 aa27.16■■□□□ 1.94
SKA3-205ENST00000465471 HSP90AB1P08238 724 aaKnown RBP27.15■■□□□ 1.94
SKA3-205ENST00000465471 MTHFSDQ2M296 383 aaKnown RBP27.15■■□□□ 1.94
SKA3-205ENST00000465471 VIRMAQ69YN4 1812 aaKnown RBP27.14■■□□□ 1.94
SKA3-205ENST00000465471 DCAF5Q96JK2 942 aa27.14■■□□□ 1.94
SKA3-205ENST00000465471 LY75O60449 1722 aa27.13■■□□□ 1.93
SKA3-205ENST00000465471 AKAP4Q5JQC9 854 aa27.13■■□□□ 1.93
SKA3-205ENST00000465471 C1orf141Q5JVX7 400 aa27.13■■□□□ 1.93
SKA3-205ENST00000465471 SYTL4Q96C24 671 aaPredicted RBP27.12■■□□□ 1.93
SKA3-205ENST00000465471 PHACTR3Q96KR7 559 aa27.12■■□□□ 1.93
SKA3-205ENST00000465471 ANP32CO43423 234 aa27.11■■□□□ 1.93
SKA3-205ENST00000465471 PROM2Q8N271 834 aa27.1■■□□□ 1.93
SKA3-205ENST00000465471 MRC1P22897 1456 aa27.1■■□□□ 1.93
SKA3-205ENST00000465471 ERVV-2B6SEH9 535 aa27.09■■□□□ 1.93
SKA3-205ENST00000465471 GAS2L2Q8NHY3 880 aa27.09■■□□□ 1.93
SKA3-205ENST00000465471 PLEKHF1Q96S99 279 aa27.08■■□□□ 1.93
SKA3-205ENST00000465471 MPRIPQ6WCQ1 1025 aa27.07■■□□□ 1.92
SKA3-205ENST00000465471 PIGBQ92521 554 aa27.07■■□□□ 1.92
SKA3-205ENST00000465471 MAP3K5Q99683 1374 aa27.07■■□□□ 1.92
SKA3-205ENST00000465471 PAPPAQ13219 1627 aa27.06■■□□□ 1.92
SKA3-205ENST00000465471 TXNRD1Q16881 649 aa27.06■■□□□ 1.92
SKA3-205ENST00000465471 TMOD3Q9NYL9 352 aa27.05■■□□□ 1.92
SKA3-205ENST00000465471 RNMTO43148 476 aaKnown RBP27.02■■□□□ 1.92
SKA3-205ENST00000465471 CCDC184Q52MB2 194 aa27.02■■□□□ 1.92
SKA3-205ENST00000465471 PNNQ9H307 717 aaKnown RBP27.02■■□□□ 1.92
SKA3-205ENST00000465471 LGR6Q9HBX8 967 aa27.02■■□□□ 1.92
SKA3-205ENST00000465471 DLG5Q8TDM6 1919 aa27.02■■□□□ 1.92
SKA3-205ENST00000465471 SIPA1L3O60292 1781 aaPredicted RBP27.02■■□□□ 1.92
SKA3-205ENST00000465471 PALLDQ8WX93 1383 aa27.01■■□□□ 1.91
SKA3-205ENST00000465471 GNAT3A8MTJ3 354 aa27.01■■□□□ 1.91
SKA3-205ENST00000465471 CEMIPQ8WUJ3 1361 aa27■■□□□ 1.91
SKA3-205ENST00000465471 CABP4P57796 275 aa26.99■■□□□ 1.91
SKA3-205ENST00000465471 WDR43Q15061 677 aaKnown RBP eCLIP26.99■■□□□ 1.91
SKA3-205ENST00000465471 SLC27A3Q5K4L6 730 aa26.99■■□□□ 1.91
SKA3-205ENST00000465471 SMARCC1Q92922 1105 aaPredicted RBP26.99■■□□□ 1.91
SKA3-205ENST00000465471 LRRC4BQ9NT99 713 aa26.99■■□□□ 1.91
SKA3-205ENST00000465471 SLC52A2Q9HAB3 445 aa26.98■■□□□ 1.91
SKA3-205ENST00000465471 ADAMTS8Q9UP79 889 aa26.98■■□□□ 1.91
SKA3-205ENST00000465471 ZNF831Q5JPB2 1677 aa26.98■■□□□ 1.91
SKA3-205ENST00000465471 IL17REQ8NFR9 667 aa26.97■■□□□ 1.91
SKA3-205ENST00000465471 ATG3Q9NT62 314 aa26.97■■□□□ 1.91
SKA3-205ENST00000465471 ASAP1Q9ULH1 1129 aa26.97■■□□□ 1.91
SKA3-205ENST00000465471 TAF1LQ8IZX4 1826 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms