RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 TMEM164Q5U3C3 297 aa7.98□□□□□ -1.13
HERC4-208ENST00000463478 ZNF598Q86UK7 904 aaKnown RBP7.98□□□□□ -1.13
HERC4-208ENST00000463478 ZBTB7CA1YPR0 619 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 ADH1CP00326 375 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 GRM5P41594 1212 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 FOXC1Q12948 553 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 ANKMY2Q8IV38 441 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 MPNDQ8N594 471 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 KCTD17Q8N5Z5 321 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 FAM200AQ8TCP9 573 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 ESF1Q9H501 851 aaKnown RBP7.97□□□□□ -1.13
HERC4-208ENST00000463478 TMPRSS4Q9NRS4 437 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 PDZRN3Q9UPQ7 1066 aa7.97□□□□□ -1.13
HERC4-208ENST00000463478 SCTRP47872 440 aa7.96□□□□□ -1.14
HERC4-208ENST00000463478 DHX9Q08211 1270 aaKnown RBP7.96□□□□□ -1.14
HERC4-208ENST00000463478 DPYDQ12882 1025 aa7.96□□□□□ -1.14
HERC4-208ENST00000463478 TRIM67Q6ZTA4 783 aa7.96□□□□□ -1.14
HERC4-208ENST00000463478 KIAA1024Q9UPX6 916 aa7.96□□□□□ -1.14
HERC4-208ENST00000463478 RBM19Q9Y4C8 960 aaKnown RBP7.96□□□□□ -1.14
HERC4-208ENST00000463478 CCDC102BQ68D86 513 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 CCDC116Q8IYX3 515 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 LARGE2Q8N3Y3 721 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 TPCN2Q8NHX9 752 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 CYLDQ9NQC7 956 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 PODXL2Q9NZ53 605 aa7.95□□□□□ -1.14
HERC4-208ENST00000463478 ZBTB7BO15156 539 aaPredicted RBP7.94□□□□□ -1.14
HERC4-208ENST00000463478 ALDH1A1P00352 501 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PRR20EP86478 221 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PRR20CP86479 221 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PRR20DP86480 221 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PRR20BP86481 221 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PRR20AP86496 221 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 NR5A1Q13285 461 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 PPP1R26Q5T8A7 1209 aaPredicted RBP7.94□□□□□ -1.14
HERC4-208ENST00000463478 CC2D2BQ6DHV5 1058 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 ZNF784Q8NCA9 323 aaPredicted RBP7.94□□□□□ -1.14
HERC4-208ENST00000463478 PCDHGA11Q9Y5H2 935 aa7.94□□□□□ -1.14
HERC4-208ENST00000463478 BRD1O95696 1058 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 NR3C2P08235 984 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 ERVK-9P63128 1117 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 SIX5Q8N196 739 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 TRIM52Q96A61 297 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 WASF2Q9Y6W5 498 aa7.93□□□□□ -1.14
HERC4-208ENST00000463478 LCE2BO14633 110 aa7.92□□□□□ -1.14
HERC4-208ENST00000463478 PKD2L1Q9P0L9 805 aa7.92□□□□□ -1.14
HERC4-208ENST00000463478 SFI1A8K8P3 1242 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 TNFRSF10AO00220 468 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 GDF9O60383 454 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 DKK1O94907 266 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 SEC13P55735 322 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 MYT1Q01538 1121 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 NNTQ13423 1086 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 OSBPL3Q9H4L5 887 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 PGPEP1Q9NXJ5 209 aa7.91□□□□□ -1.14
HERC4-208ENST00000463478 TTC24A2A3L6 582 aaPredicted RBP7.9□□□□□ -1.14
HERC4-208ENST00000463478 B4GALNT3Q6L9W6 998 aa7.9□□□□□ -1.14
HERC4-208ENST00000463478 SNIP1Q8TAD8 396 aaKnown RBP7.9□□□□□ -1.14
HERC4-208ENST00000463478 EMILIN1Q9Y6C2 1016 aa7.9□□□□□ -1.14
HERC4-208ENST00000463478 KCNA1Q09470 495 aa7.89□□□□□ -1.15
HERC4-208ENST00000463478 FAM69CQ0P6D2 419 aa7.89□□□□□ -1.15
HERC4-208ENST00000463478 SWI5Q1ZZU3 235 aa7.89□□□□□ -1.15
HERC4-208ENST00000463478 CYP4X1Q8N118 509 aa7.89□□□□□ -1.15
HERC4-208ENST00000463478 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.89□□□□□ -1.15
HERC4-208ENST00000463478 PATL2C9JE40 543 aaKnown RBP7.88□□□□□ -1.15
HERC4-208ENST00000463478 J3QL48 77 aa7.88□□□□□ -1.15
HERC4-208ENST00000463478 LILRA1O75019 489 aa7.88□□□□□ -1.15
HERC4-208ENST00000463478 LGR5O75473 907 aa7.88□□□□□ -1.15
HERC4-208ENST00000463478 STAU1O95793 577 aaKnown RBP7.88□□□□□ -1.15
HERC4-208ENST00000463478 CYP2U1Q7Z449 544 aa7.88□□□□□ -1.15
HERC4-208ENST00000463478 CLP1Q92989 425 aaKnown RBP7.88□□□□□ -1.15
HERC4-208ENST00000463478 SLAIN2Q9P270 581 aa7.88□□□□□ -1.15
HERC4-208ENST00000463478 HINFPQ9BQA5 517 aa7.87□□□□□ -1.15
HERC4-208ENST00000463478 ZNF358Q9NW07 568 aa7.87□□□□□ -1.15
HERC4-208ENST00000463478 PRMT3O60678 531 aa7.86□□□□□ -1.15
HERC4-208ENST00000463478 ATP2B4P23634 1241 aa7.86□□□□□ -1.15
HERC4-208ENST00000463478 ADD1P35611 737 aaKnown RBP7.86□□□□□ -1.15
HERC4-208ENST00000463478 GDF10P55107 478 aa7.86□□□□□ -1.15
HERC4-208ENST00000463478 TSEN2Q8NCE0 465 aaKnown RBP7.86□□□□□ -1.15
HERC4-208ENST00000463478 TMEM229AB2RXF0 380 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 ZIC2O95409 532 aaPredicted RBP7.85□□□□□ -1.15
HERC4-208ENST00000463478 SSFA2P28290 1259 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 SCNN1DP51172 638 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 WDR4P57081 412 aaKnown RBP7.85□□□□□ -1.15
HERC4-208ENST00000463478 CBLBQ13191 982 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 ITPKCQ96DU7 683 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 PRIMPOLQ96LW4 560 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 ETNK1Q9HBU6 452 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 RAB6BQ9NRW1 208 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 IVNS1ABPQ9Y6Y0 642 aa7.85□□□□□ -1.15
HERC4-208ENST00000463478 M0R2N6 131 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 DGAT1O75907 488 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 GNRH1P01148 92 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 PKDCCQ504Y2 493 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 PHLDB3Q6NSJ2 640 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 GZF1Q9H116 711 aaPredicted RBP7.84□□□□□ -1.15
HERC4-208ENST00000463478 ZFAND3Q9H8U3 227 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 ARHGEF10LQ9HCE6 1279 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 TOR4AQ9NXH8 423 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 SERTAD1Q9UHV2 236 aa7.84□□□□□ -1.15
HERC4-208ENST00000463478 FAM187AA6NFU0 413 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms