RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 PARD3Q8TEW0 1356 aa16.08■□□□□ 0.16
VPS52-213ENST00000461743 NUP188Q5SRE5 1749 aa16.08■□□□□ 0.16
VPS52-213ENST00000461743 TOGARAM1Q9Y4F4 1720 aa16.07■□□□□ 0.16
VPS52-213ENST00000461743 KDRP35968 1356 aa16.06■□□□□ 0.16
VPS52-213ENST00000461743 TATP17735 454 aaPredicted RBP16.06■□□□□ 0.16
VPS52-213ENST00000461743 MARCH10Q8NA82 808 aaPredicted RBP16.06■□□□□ 0.16
VPS52-213ENST00000461743 FAM182BQ5T319 152 aa16.05■□□□□ 0.16
VPS52-213ENST00000461743 PCDH11XQ9BZA7 1347 aa16.04■□□□□ 0.16
VPS52-213ENST00000461743 PCDH11YQ9BZA8 1340 aa16.04■□□□□ 0.16
VPS52-213ENST00000461743 BAG6P46379 1132 aa16.04■□□□□ 0.16
VPS52-213ENST00000461743 USHBP1Q8N6Y0 703 aa16.04■□□□□ 0.16
VPS52-213ENST00000461743 EYA1Q99502 592 aa16.04■□□□□ 0.16
VPS52-213ENST00000461743 LY75O60449 1722 aa16.03■□□□□ 0.16
VPS52-213ENST00000461743 MTHFSP49914 203 aa16.03■□□□□ 0.16
VPS52-213ENST00000461743 ZCRB1Q8TBF4 217 aaKnown RBP16.03■□□□□ 0.16
VPS52-213ENST00000461743 SCN11AQ9UI33 1791 aa16.03■□□□□ 0.16
VPS52-213ENST00000461743 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.02■□□□□ 0.16
VPS52-213ENST00000461743 IL13P35225 146 aa16.01■□□□□ 0.15
VPS52-213ENST00000461743 TRIM37O94972 964 aa16■□□□□ 0.15
VPS52-213ENST00000461743 BCL11BQ9C0K0 894 aaPredicted RBP16■□□□□ 0.15
VPS52-213ENST00000461743 DIAPH1O60610 1272 aaKnown RBP15.99■□□□□ 0.15
VPS52-213ENST00000461743 CFAP53Q96M91 514 aa15.99■□□□□ 0.15
VPS52-213ENST00000461743 SPG7Q9UQ90 795 aa15.99■□□□□ 0.15
VPS52-213ENST00000461743 ADAMTS7Q9UKP4 1686 aa15.99■□□□□ 0.15
VPS52-213ENST00000461743 PPP2R1AP30153 589 aa15.98■□□□□ 0.15
VPS52-213ENST00000461743 RALBP1Q15311 655 aa15.98■□□□□ 0.15
VPS52-213ENST00000461743 QSER1Q2KHR3 1735 aa15.97■□□□□ 0.15
VPS52-213ENST00000461743 DDX10Q13206 875 aaKnown RBP15.97■□□□□ 0.15
VPS52-213ENST00000461743 PLSCR1O15162 318 aa15.96■□□□□ 0.15
VPS52-213ENST00000461743 DEFB132Q7Z7B7 95 aa15.96■□□□□ 0.15
VPS52-213ENST00000461743 DDX54Q8TDD1 881 aaKnown RBP15.96■□□□□ 0.15
VPS52-213ENST00000461743 PAPPAQ13219 1627 aa15.96■□□□□ 0.15
VPS52-213ENST00000461743 TAF1LQ8IZX4 1826 aa15.96■□□□□ 0.14
VPS52-213ENST00000461743 ZNF316A6NFI3 1004 aaPredicted RBP15.95■□□□□ 0.14
VPS52-213ENST00000461743 APBA3O96018 575 aa15.95■□□□□ 0.14
VPS52-213ENST00000461743 AMOTQ4VCS5 1084 aa15.95■□□□□ 0.14
VPS52-213ENST00000461743 ZNF831Q5JPB2 1677 aa15.95■□□□□ 0.14
VPS52-213ENST00000461743 CYP27B1O15528 508 aa15.94■□□□□ 0.14
VPS52-213ENST00000461743 CNGB1Q14028 1251 aaPredicted RBP15.94■□□□□ 0.14
VPS52-213ENST00000461743 NKX1-1Q15270 411 aaPredicted RBP15.94■□□□□ 0.14
VPS52-213ENST00000461743 SULT6B1Q6IMI4 303 aa15.94■□□□□ 0.14
VPS52-213ENST00000461743 CAMKK2Q96RR4 588 aa15.94■□□□□ 0.14
VPS52-213ENST00000461743 C5P01031 1676 aa15.93■□□□□ 0.14
VPS52-213ENST00000461743 EN1Q05925 392 aaPredicted RBP15.93■□□□□ 0.14
VPS52-213ENST00000461743 PLEKHO1Q53GL0 409 aaPredicted RBP15.93■□□□□ 0.14
VPS52-213ENST00000461743 IFNL2Q8IZJ0 200 aa15.93■□□□□ 0.14
VPS52-213ENST00000461743 DLG5Q8TDM6 1919 aa15.93■□□□□ 0.14
VPS52-213ENST00000461743 HSP90AB1P08238 724 aaKnown RBP15.92■□□□□ 0.14
VPS52-213ENST00000461743 AEBP1Q8IUX7 1158 aa15.92■□□□□ 0.14
VPS52-213ENST00000461743 NUDCQ9Y266 331 aa15.92■□□□□ 0.14
VPS52-213ENST00000461743 SIPA1L3O60292 1781 aaPredicted RBP15.92■□□□□ 0.14
VPS52-213ENST00000461743 MYBBP1AQ9BQG0 1328 aaKnown RBP15.92■□□□□ 0.14
VPS52-213ENST00000461743 MRC1P22897 1456 aa15.91■□□□□ 0.14
VPS52-213ENST00000461743 CICQ96RK0 1608 aaPredicted RBP15.91■□□□□ 0.14
VPS52-213ENST00000461743 PHKG2P15735 406 aa15.91■□□□□ 0.14
VPS52-213ENST00000461743 ACSBG1Q96GR2 724 aa15.91■□□□□ 0.14
VPS52-213ENST00000461743 TUBGCP6Q96RT7 1819 aa15.9■□□□□ 0.14
VPS52-213ENST00000461743 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
VPS52-213ENST00000461743 KCNQ2O43526 872 aa15.89■□□□□ 0.13
VPS52-213ENST00000461743 CASZ1Q86V15 1759 aa15.88■□□□□ 0.13
VPS52-213ENST00000461743 KDM6AO15550 1401 aaPredicted RBP15.88■□□□□ 0.13
VPS52-213ENST00000461743 LRP5O75197 1615 aa15.88■□□□□ 0.13
VPS52-213ENST00000461743 U2SURPO15042 1029 aaKnown RBP15.88■□□□□ 0.13
VPS52-213ENST00000461743 ZNF530Q6P9A1 599 aaPredicted RBP15.88■□□□□ 0.13
VPS52-213ENST00000461743 PTF1AQ7RTS3 328 aa15.88■□□□□ 0.13
VPS52-213ENST00000461743 DCAF5Q96JK2 942 aa15.88■□□□□ 0.13
VPS52-213ENST00000461743 UBR2Q8IWV8 1755 aa15.87■□□□□ 0.13
VPS52-213ENST00000461743 HMOX1P09601 288 aa15.87■□□□□ 0.13
VPS52-213ENST00000461743 C1orf141Q5JVX7 400 aa15.87■□□□□ 0.13
VPS52-213ENST00000461743 COL5A3P25940 1745 aaPredicted RBP15.87■□□□□ 0.13
VPS52-213ENST00000461743 HMGB2P26583 209 aaKnown RBP15.86■□□□□ 0.13
VPS52-213ENST00000461743 PRIM1P49642 420 aaKnown RBP15.86■□□□□ 0.13
VPS52-213ENST00000461743 SYTL4Q96C24 671 aaPredicted RBP15.86■□□□□ 0.13
VPS52-213ENST00000461743 PRKRIP1Q9H875 184 aaPredicted RBP15.86■□□□□ 0.13
VPS52-213ENST00000461743 ERVV-2B6SEH9 535 aa15.85■□□□□ 0.13
VPS52-213ENST00000461743 AKAP4Q5JQC9 854 aa15.85■□□□□ 0.13
VPS52-213ENST00000461743 RSPH6AQ9H0K4 717 aa15.85■□□□□ 0.13
VPS52-213ENST00000461743 FCHSD2O94868 740 aa15.84■□□□□ 0.13
VPS52-213ENST00000461743 TXNRD1Q16881 649 aa15.84■□□□□ 0.13
VPS52-213ENST00000461743 SLC27A3Q5K4L6 730 aa15.84■□□□□ 0.13
VPS52-213ENST00000461743 GAS2L2Q8NHY3 880 aa15.84■□□□□ 0.13
VPS52-213ENST00000461743 C4BP0C0L5 1744 aa15.83■□□□□ 0.13
VPS52-213ENST00000461743 UBR3Q6ZT12 1888 aa15.83■□□□□ 0.12
VPS52-213ENST00000461743 U2AF1L5P0DN76 240 aaPredicted RBP15.83■□□□□ 0.12
VPS52-213ENST00000461743 U2AF1Q01081 240 aaKnown RBP eCLIP15.83■□□□□ 0.123e-7■■□□□ 12.8
VPS52-213ENST00000461743 NBPF14Q5TI25 921 aa15.83■□□□□ 0.12
VPS52-213ENST00000461743 SMARCC1Q92922 1105 aaPredicted RBP15.83■□□□□ 0.12
VPS52-213ENST00000461743 TMOD3Q9NYL9 352 aa15.83■□□□□ 0.12
VPS52-213ENST00000461743 MAP3K5Q99683 1374 aa15.83■□□□□ 0.12
VPS52-213ENST00000461743 PALLDQ8WX93 1383 aa15.82■□□□□ 0.12
VPS52-213ENST00000461743 PRKAR2BP31323 418 aa15.81■□□□□ 0.12
VPS52-213ENST00000461743 TJP1Q07157 1748 aa15.81■□□□□ 0.12
VPS52-213ENST00000461743 COL24A1Q17RW2 1714 aa15.81■□□□□ 0.12
VPS52-213ENST00000461743 MPRIPQ6WCQ1 1025 aa15.81■□□□□ 0.12
VPS52-213ENST00000461743 PNNQ9H307 717 aaKnown RBP15.81■□□□□ 0.12
VPS52-213ENST00000461743 MTHFSDQ2M296 383 aaKnown RBP15.8■□□□□ 0.12
VPS52-213ENST00000461743 PROM2Q8N271 834 aa15.8■□□□□ 0.12
VPS52-213ENST00000461743 NEFMP07197 916 aa15.79■□□□□ 0.12
VPS52-213ENST00000461743 PIGBQ92521 554 aa15.79■□□□□ 0.12
VPS52-213ENST00000461743 KDM3BQ7LBC6 1761 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms