RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	ORAI2	Q96SN7	254 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	ZNF831	Q5JPB2	1677 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	PMFBP1	Q8TBY8	1022 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	DIAPH1	O60610	1272 aa	Known RBP	11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	NME9	Q86XW9	330 aa		11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	PHF8	Q9UPP1	1060 aa		11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	ARHGAP45	Q92619	1136 aa		11.26	□□□□□ -0.61
SYNE1-215	ENST00000460912	ATF7IP	Q6VMQ6	1270 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	PROSER2	Q86WR7	435 aa	Predicted RBP	11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	VAMP4	O75379	141 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	PDZRN3	Q9UPQ7	1066 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	SPATA31A3	Q5VYP0	1347 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	LRP6	O75581	1613 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	MRPL50	Q8N5N7	158 aa	Known RBP	11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	RBM33	Q96EV2	1170 aa	Known RBP	11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	MRC1	P22897	1456 aa		11.25	□□□□□ -0.61
SYNE1-215	ENST00000460912	NFE2L2	Q16236	605 aa		11.24	□□□□□ -0.61
SYNE1-215	ENST00000460912	ZKSCAN2	Q63HK3	967 aa		11.24	□□□□□ -0.61
SYNE1-215	ENST00000460912	RREB1	Q92766	1687 aa		11.24	□□□□□ -0.61
SYNE1-215	ENST00000460912	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.24	□□□□□ -0.61
SYNE1-215	ENST00000460912	DZIP1L	Q8IYY4	767 aa	Known RBP	11.24	□□□□□ -0.61
SYNE1-215	ENST00000460912	ZBTB7B	O15156	539 aa	Predicted RBP	11.23	□□□□□ -0.61
SYNE1-215	ENST00000460912	FBLN1	P23142	703 aa		11.23	□□□□□ -0.61
SYNE1-215	ENST00000460912	CADPS2	Q86UW7	1296 aa		11.23	□□□□□ -0.61
SYNE1-215	ENST00000460912	SIRT2	Q8IXJ6	389 aa		11.23	□□□□□ -0.61
SYNE1-215	ENST00000460912	IFT57	Q9NWB7	429 aa		11.23	□□□□□ -0.61
SYNE1-215	ENST00000460912	NBR1	Q14596	966 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	NOB1	Q9ULX3	412 aa	Known RBP	11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	ARHGEF10	O15013	1369 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	NUCB1	Q02818	461 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	EMILIN1	Q9Y6C2	1016 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	ITGB4	P16144	1822 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	RIPK4	P57078	832 aa		11.22	□□□□□ -0.61
SYNE1-215	ENST00000460912	KIAA0232	Q92628	1395 aa		11.21	□□□□□ -0.61
SYNE1-215	ENST00000460912	TMEM57	Q8N5G2	664 aa		11.21	□□□□□ -0.61
SYNE1-215	ENST00000460912	LAMB4	A4D0S4	1761 aa		11.21	□□□□□ -0.61
SYNE1-215	ENST00000460912	SBF2	Q86WG5	1849 aa		11.21	□□□□□ -0.61
SYNE1-215	ENST00000460912	SLAIN2	Q9P270	581 aa		11.21	□□□□□ -0.61
SYNE1-215	ENST00000460912	BCL2L13	Q9BXK5	485 aa		11.21	□□□□□ -0.62
SYNE1-215	ENST00000460912	KIF16B	Q96L93	1317 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	COL5A2	P05997	1499 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	C5	P01031	1676 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	PPM1G	O15355	546 aa	Predicted RBP	11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	PRKAR2B	P31323	418 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	TSPYL6	Q8N831	410 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	KIF2C	Q99661	725 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	DISP2	A7MBM2	1401 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	NFKBIB	Q15653	356 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	NEUROD2	Q15784	382 aa		11.2	□□□□□ -0.62
SYNE1-215	ENST00000460912	SLIT2	O94813	1529 aa		11.19	□□□□□ -0.62
SYNE1-215	ENST00000460912	MBIP	Q9NS73	344 aa		11.19	□□□□□ -0.62
SYNE1-215	ENST00000460912	DDX19B	Q9UMR2	479 aa		11.19	□□□□□ -0.62
SYNE1-215	ENST00000460912	PNN	Q9H307	717 aa	Known RBP	11.19	□□□□□ -0.62
SYNE1-215	ENST00000460912	CFAP44	Q96MT7	982 aa		11.19	□□□□□ -0.62
SYNE1-215	ENST00000460912	FLT4	P35916	1363 aa		11.18	□□□□□ -0.62
SYNE1-215	ENST00000460912	OVOS2	A0A0G2JMS6	1433 aa		11.18	□□□□□ -0.62
SYNE1-215	ENST00000460912	IGSF1	Q8N6C5	1336 aa		11.18	□□□□□ -0.62
SYNE1-215	ENST00000460912	RBM25	P49756	843 aa	Known RBP	11.18	□□□□□ -0.62
SYNE1-215	ENST00000460912	RWDD1	Q9H446	243 aa	Predicted RBP	11.18	□□□□□ -0.62
SYNE1-215	ENST00000460912	MAP3K19	Q56UN5	1328 aa		11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	RGS3	P49796	1198 aa		11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	ARHGEF25	Q86VW2	580 aa		11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	FRAT1	Q92837	279 aa	Predicted RBP	11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	NPM2	Q86SE8	214 aa	Known RBP	11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	PXDNL	A1KZ92	1463 aa		11.17	□□□□□ -0.62
SYNE1-215	ENST00000460912	CHL1	O00533	1208 aa		11.16	□□□□□ -0.62
SYNE1-215	ENST00000460912	EIF4A2	Q14240	407 aa	Known RBP	11.16	□□□□□ -0.62
SYNE1-215	ENST00000460912	NPHP3	Q7Z494	1330 aa		11.16	□□□□□ -0.62
SYNE1-215	ENST00000460912	SLC4A3	P48751	1232 aa		11.16	□□□□□ -0.62
SYNE1-215	ENST00000460912	C8orf58	Q8NAV2	365 aa		11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	SMC4	Q9NTJ3	1288 aa		11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	INTS3	Q68E01	1043 aa	Known RBP	11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	KRT28	Q7Z3Y7	464 aa		11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	COL5A3	P25940	1745 aa	Predicted RBP	11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	TBC1D2	Q9BYX2	928 aa		11.15	□□□□□ -0.62
SYNE1-215	ENST00000460912	U2SURP	O15042	1029 aa	Known RBP	11.14	□□□□□ -0.63
SYNE1-215	ENST00000460912	ESCO1	Q5FWF5	840 aa		11.14	□□□□□ -0.63
SYNE1-215	ENST00000460912	BRWD3	Q6RI45	1802 aa		11.14	□□□□□ -0.63
SYNE1-215	ENST00000460912	HOXC9	P31274	260 aa		11.14	□□□□□ -0.63
SYNE1-215	ENST00000460912	LAS1L	Q9Y4W2	734 aa	Known RBP	11.14	□□□□□ -0.63
SYNE1-215	ENST00000460912	TJP1	Q07157	1748 aa		11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	NEFM	P07197	916 aa		11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	DDX17	Q92841	729 aa	Known RBP	11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	DOT1L	Q8TEK3	1739 aa		11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	GNAI1	P63096	354 aa		11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	THUMPD2	Q9BTF0	503 aa	Known RBP	11.13	□□□□□ -0.63
SYNE1-215	ENST00000460912	LY75	O60449	1722 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	SALL3	Q9BXA9	1300 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	ATF3	P18847	181 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	BMP2KL	Q5H9B9	411 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	RGPD3	A6NKT7	1758 aa	Predicted RBP	11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	RGPD4	Q7Z3J3	1758 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	IP6K1	Q92551	441 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	NUP188	Q5SRE5	1749 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	MEGF6	O75095	1541 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912	NHS	Q6T4R5	1651 aa		11.12	□□□□□ -0.63
SYNE1-215	ENST00000460912		A0A0U1RQG5	324 aa	Predicted RBP	11.11	□□□□□ -0.63

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