RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 ZNF396Q96N95 335 aaPredicted RBP17.6■□□□□ 0.41
PTPRU-205ENST00000460170 TBC1D32Q96NH3 1257 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 PTPRCP08575 1304 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 STK3Q13188 491 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 IPO7O95373 1038 aaKnown RBP17.6■□□□□ 0.41
PTPRU-205ENST00000460170 SART3Q15020 963 aaKnown RBP17.6■□□□□ 0.41
PTPRU-205ENST00000460170 HDAC1Q13547 482 aaPredicted RBP17.59■□□□□ 0.41
PTPRU-205ENST00000460170 STRN4Q9NRL3 753 aa17.59■□□□□ 0.41
PTPRU-205ENST00000460170 AMOTL2Q9Y2J4 779 aa17.59■□□□□ 0.41
PTPRU-205ENST00000460170 GLRX3O76003 335 aaKnown RBP17.59■□□□□ 0.41
PTPRU-205ENST00000460170 XPCQ01831 940 aaPredicted RBP17.59■□□□□ 0.41
PTPRU-205ENST00000460170 TTC39AQ5SRH9 613 aa17.59■□□□□ 0.41
PTPRU-205ENST00000460170 CCDC192P0DO97 292 aa17.59■□□□□ 0.41
PTPRU-205ENST00000460170 TOM1L2Q6ZVM7 507 aa17.59■□□□□ 0.41
PTPRU-205ENST00000460170 DNMT1P26358 1616 aaKnown RBP17.59■□□□□ 0.41
PTPRU-205ENST00000460170 XBP1P17861 261 aa17.58■□□□□ 0.41
PTPRU-205ENST00000460170 OLFM4Q6UX06 510 aa17.58■□□□□ 0.41
PTPRU-205ENST00000460170 TTC21BQ7Z4L5 1316 aa17.58■□□□□ 0.4
PTPRU-205ENST00000460170 UPF3BQ9BZI7 483 aaKnown RBP17.58■□□□□ 0.4
PTPRU-205ENST00000460170 EIF2AK4Q9P2K8 1649 aaKnown RBP17.58■□□□□ 0.4
PTPRU-205ENST00000460170 CNNM1Q9NRU3 951 aa17.58■□□□□ 0.4
PTPRU-205ENST00000460170 CEBPZQ03701 1054 aaKnown RBP17.57■□□□□ 0.4
PTPRU-205ENST00000460170 ARHGAP45Q92619 1136 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 A0A0U1RQG5 324 aaPredicted RBP17.57■□□□□ 0.4
PTPRU-205ENST00000460170 ZC3H6P61129 1189 aaKnown RBP17.57■□□□□ 0.4
PTPRU-205ENST00000460170 STK38Q15208 465 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 A2MP01023 1474 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 PIK3C2GO75747 1445 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 UHRF1BP1Q6BDS2 1440 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 PLEKHH1Q9ULM0 1364 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 DDX54Q8TDD1 881 aaKnown RBP17.57■□□□□ 0.4
PTPRU-205ENST00000460170 FAM83GA6ND36 823 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 TBC1D9Q6ZT07 1266 aa17.57■□□□□ 0.4
PTPRU-205ENST00000460170 FAM177BA6PVY3 158 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 KRT32Q14532 448 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.56■□□□□ 0.4
PTPRU-205ENST00000460170 ESPNB1AK53 854 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 PCMTD1Q96MG8 357 aaPredicted RBP17.56■□□□□ 0.4
PTPRU-205ENST00000460170 FLIIQ13045 1269 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 PUS7Q96PZ0 661 aaKnown RBP17.56■□□□□ 0.4
PTPRU-205ENST00000460170 BRMS1Q9HCU9 246 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 FBLN1P23142 703 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 CCDC57Q2TAC2 916 aa17.56■□□□□ 0.4
PTPRU-205ENST00000460170 USHBP1Q8N6Y0 703 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 CARD14Q9BXL6 1004 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 TNMDQ9H2S6 317 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 LRRFIP2Q9Y608 721 aaKnown RBP17.55■□□□□ 0.4
PTPRU-205ENST00000460170 PDIA4P13667 645 aaKnown RBP17.55■□□□□ 0.4
PTPRU-205ENST00000460170 CASTP20810 708 aaKnown RBP17.55■□□□□ 0.4
PTPRU-205ENST00000460170 PRDM11Q9NQV5 511 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 GPS2Q13227 327 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 AMOTQ4VCS5 1084 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 RBM33Q96EV2 1170 aaKnown RBP17.55■□□□□ 0.4
PTPRU-205ENST00000460170 CEP126Q9P2H0 1117 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 PHF8Q9UPP1 1060 aa17.55■□□□□ 0.4
PTPRU-205ENST00000460170 TEX14Q8IWB6 1497 aa17.54■□□□□ 0.4
PTPRU-205ENST00000460170 KDM4AO75164 1064 aa17.54■□□□□ 0.4
PTPRU-205ENST00000460170 RAD21O60216 631 aa17.54■□□□□ 0.4
PTPRU-205ENST00000460170 NUCB1Q02818 461 aa17.54■□□□□ 0.4
PTPRU-205ENST00000460170 TNPO1Q92973 898 aaKnown RBP17.54■□□□□ 0.4
PTPRU-205ENST00000460170 DNAAF4Q8WXU2 420 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 ASXL2Q76L83 1435 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 DISP1Q96F81 1524 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 LARP1Q6PKG0 1096 aaKnown RBP17.53■□□□□ 0.4
PTPRU-205ENST00000460170 FMNL2Q96PY5 1086 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 COL17A1Q9UMD9 1497 aaPredicted RBP17.53■□□□□ 0.4
PTPRU-205ENST00000460170 ATP2B1P20020 1258 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 HMGN5P82970 282 aaKnown RBP17.53■□□□□ 0.4
PTPRU-205ENST00000460170 MAP7D2Q96T17 732 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 ACEP12821 1306 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 ADGRL2O95490 1459 aa17.53■□□□□ 0.4
PTPRU-205ENST00000460170 CCDC70Q6NSX1 233 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 MTERF4Q7Z6M4 381 aaKnown RBP17.52■□□□□ 0.4
PTPRU-205ENST00000460170 FKBP4Q02790 459 aaKnown RBP eCLIP17.52■□□□□ 0.4
PTPRU-205ENST00000460170 C8orf34Q49A92 452 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 SSFA2P28290 1259 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 JMYQ8N9B5 988 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 SPC24Q8NBT2 197 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 MNS1Q8NEH6 495 aa17.52■□□□□ 0.4
PTPRU-205ENST00000460170 ME1P48163 572 aa17.52■□□□□ 0.39
PTPRU-205ENST00000460170 RRP12Q5JTH9 1297 aaKnown RBP17.52■□□□□ 0.39
PTPRU-205ENST00000460170 SPATA32Q96LK8 384 aa17.52■□□□□ 0.39
PTPRU-205ENST00000460170 ZNF518AQ6AHZ1 1483 aa17.51■□□□□ 0.39
PTPRU-205ENST00000460170 TRIM34Q9BYJ4 488 aa17.51■□□□□ 0.39
PTPRU-205ENST00000460170 TNNT3P45378 269 aaPredicted RBP17.51■□□□□ 0.39
PTPRU-205ENST00000460170 SMC2O95347 1197 aa17.51■□□□□ 0.39
PTPRU-205ENST00000460170 DBF4Q9UBU7 674 aaPredicted RBP17.51■□□□□ 0.39
PTPRU-205ENST00000460170 CTNNA3Q9UI47 895 aa17.51■□□□□ 0.39
PTPRU-205ENST00000460170 SYCE3A1L190 88 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 PRPF40BQ6NWY9 871 aaKnown RBP17.5■□□□□ 0.39
PTPRU-205ENST00000460170 CEP89Q96ST8 783 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 CFAP45Q9UL16 551 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 MPRIPQ6WCQ1 1025 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 WDR7Q9Y4E6 1490 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 TTC22Q5TAA0 569 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 ZSCAN25Q6NSZ9 544 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 MPNDQ8N594 471 aa17.5■□□□□ 0.39
PTPRU-205ENST00000460170 CEBPAP49715 358 aaPredicted RBP17.49■□□□□ 0.39
PTPRU-205ENST00000460170 PDILTQ8N807 584 aa17.49■□□□□ 0.39
PTPRU-205ENST00000460170 NUP62CLQ9H1M0 184 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms