RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 MED1Q15648 1581 aaPredicted RBP13.34□□□□□ -0.27
HERC4-207ENST00000460168 DLG5Q8TDM6 1919 aa13.33□□□□□ -0.28
HERC4-207ENST00000460168 ZC3H6P61129 1189 aaKnown RBP13.33□□□□□ -0.28
HERC4-207ENST00000460168 IL16Q14005 1332 aa13.33□□□□□ -0.28
HERC4-207ENST00000460168 CHRM1P11229 460 aaPredicted RBP13.32□□□□□ -0.28
HERC4-207ENST00000460168 CALD1Q05682 793 aaKnown RBP13.32□□□□□ -0.28
HERC4-207ENST00000460168 CABLES1Q8TDN4 633 aa13.32□□□□□ -0.28
HERC4-207ENST00000460168 TSR2Q969E8 191 aaKnown RBP13.32□□□□□ -0.28
HERC4-207ENST00000460168 SOS2Q07890 1332 aaPredicted RBP13.32□□□□□ -0.28
HERC4-207ENST00000460168 RRP9O43818 475 aaKnown RBP13.31□□□□□ -0.28
HERC4-207ENST00000460168 PLIN1O60240 522 aa13.31□□□□□ -0.28
HERC4-207ENST00000460168 THUMPD2Q9BTF0 503 aaKnown RBP13.31□□□□□ -0.28
HERC4-207ENST00000460168 LAS1LQ9Y4W2 734 aaKnown RBP13.31□□□□□ -0.28
HERC4-207ENST00000460168 TEX2Q8IWB9 1127 aa13.3□□□□□ -0.28
HERC4-207ENST00000460168 USHBP1Q8N6Y0 703 aa13.3□□□□□ -0.28
HERC4-207ENST00000460168 FAM83GA6ND36 823 aa13.29□□□□□ -0.28
HERC4-207ENST00000460168 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.29□□□□□ -0.28
HERC4-207ENST00000460168 LTBP4Q8N2S1 1624 aa13.29□□□□□ -0.28
HERC4-207ENST00000460168 NBPF6Q5VWK0 638 aa13.29□□□□□ -0.28
HERC4-207ENST00000460168 ANKRD24Q8TF21 1146 aa13.29□□□□□ -0.28
HERC4-207ENST00000460168 BBXQ8WY36 941 aaPredicted RBP13.29□□□□□ -0.28
HERC4-207ENST00000460168 NBPF4Q96M43 638 aa13.29□□□□□ -0.28
HERC4-207ENST00000460168 CHMP4BQ9H444 224 aaKnown RBP13.29□□□□□ -0.28
HERC4-207ENST00000460168 DCTN1Q14203 1278 aa13.28□□□□□ -0.28
HERC4-207ENST00000460168 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
HERC4-207ENST00000460168 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.28□□□□□ -0.28
HERC4-207ENST00000460168 LRRC59Q96AG4 307 aaKnown RBP13.28□□□□□ -0.28
HERC4-207ENST00000460168 ZFP91Q96JP5 570 aaPredicted RBP13.28□□□□□ -0.28
HERC4-207ENST00000460168 PPP4R2Q9NY27 417 aa13.28□□□□□ -0.28
HERC4-207ENST00000460168 AXIN2Q9Y2T1 843 aa13.28□□□□□ -0.28
HERC4-207ENST00000460168 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
HERC4-207ENST00000460168 GAS2L2Q8NHY3 880 aa13.28□□□□□ -0.28
HERC4-207ENST00000460168 CRYBG1Q9Y4K1 1723 aa13.27□□□□□ -0.28
HERC4-207ENST00000460168 BCAR3O75815 825 aa13.27□□□□□ -0.28
HERC4-207ENST00000460168 GNAI1P63096 354 aa13.27□□□□□ -0.28
HERC4-207ENST00000460168 EXOSC9Q06265 439 aaKnown RBP13.27□□□□□ -0.28
HERC4-207ENST00000460168 RGPD2P0DJD1 1756 aa13.27□□□□□ -0.29
HERC4-207ENST00000460168 RGPD5Q99666 1765 aa13.27□□□□□ -0.29
HERC4-207ENST00000460168 GTF2E1P29083 439 aaPredicted RBP13.27□□□□□ -0.29
HERC4-207ENST00000460168 RTF1Q92541 710 aaKnown RBP13.27□□□□□ -0.29
HERC4-207ENST00000460168 IFT57Q9NWB7 429 aa13.27□□□□□ -0.29
HERC4-207ENST00000460168 ERBB3P21860 1342 aa13.26□□□□□ -0.29
HERC4-207ENST00000460168 CT47B1P0C2W7 299 aaPredicted RBP13.26□□□□□ -0.29
HERC4-207ENST00000460168 MCM10Q7L590 875 aa13.26□□□□□ -0.29
HERC4-207ENST00000460168 KIAA0232Q92628 1395 aa13.26□□□□□ -0.29
HERC4-207ENST00000460168 ROBO1Q9Y6N7 1651 aa13.26□□□□□ -0.29
HERC4-207ENST00000460168 CANXP27824 592 aaKnown RBP13.25□□□□□ -0.29
HERC4-207ENST00000460168 CHRNA2Q15822 529 aa13.25□□□□□ -0.29
HERC4-207ENST00000460168 CFAP44Q96MT7 982 aa13.25□□□□□ -0.29
HERC4-207ENST00000460168 RARSP54136 660 aaKnown RBP13.25□□□□□ -0.29
HERC4-207ENST00000460168 CPDO75976 1380 aa13.24□□□□□ -0.29
HERC4-207ENST00000460168 EXOC6Q8TAG9 804 aa13.24□□□□□ -0.29
HERC4-207ENST00000460168 BCL2L13Q9BXK5 485 aa13.24□□□□□ -0.29
HERC4-207ENST00000460168 PRDM11Q9NQV5 511 aa13.24□□□□□ -0.29
HERC4-207ENST00000460168 MBIPQ9NS73 344 aa13.24□□□□□ -0.29
HERC4-207ENST00000460168 ZBTB22O15209 634 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 ZNF853P0CG23 659 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 CSB-PGBD3P0DP91 1061 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 ABCC6O95255 1503 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 C20orf194Q5TEA3 1177 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 FRAT1Q92837 279 aaPredicted RBP13.23□□□□□ -0.29
HERC4-207ENST00000460168 NLRP2Q9NX02 1062 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 PRDM4Q9UKN5 801 aa13.23□□□□□ -0.29
HERC4-207ENST00000460168 COL18A1P39060 1754 aa13.22□□□□□ -0.29
HERC4-207ENST00000460168 MAP3K5Q99683 1374 aa13.21□□□□□ -0.29
HERC4-207ENST00000460168 HTATSF1O43719 755 aaKnown RBP13.21□□□□□ -0.29
HERC4-207ENST00000460168 CAMTA1Q9Y6Y1 1673 aa13.21□□□□□ -0.29
HERC4-207ENST00000460168 ABCA3Q99758 1704 aa13.21□□□□□ -0.29
HERC4-207ENST00000460168 FTSJ3Q8IY81 847 aaKnown RBP13.21□□□□□ -0.29
HERC4-207ENST00000460168 CRBNQ96SW2 442 aa13.21□□□□□ -0.29
HERC4-207ENST00000460168 SMC4Q9NTJ3 1288 aa13.21□□□□□ -0.29
HERC4-207ENST00000460168 NCAPD2Q15021 1401 aa13.21□□□□□ -0.3
HERC4-207ENST00000460168 HSP90AA2PQ14568 343 aaPredicted RBP13.2□□□□□ -0.3
HERC4-207ENST00000460168 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
HERC4-207ENST00000460168 AHDC1Q5TGY3 1603 aaPredicted RBP13.2□□□□□ -0.3
HERC4-207ENST00000460168 FAM208AQ9UK61 1670 aaKnown RBP13.19□□□□□ -0.3
HERC4-207ENST00000460168 AMOTQ4VCS5 1084 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 RAPGEF4Q8WZA2 1011 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 CRB1P82279 1406 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 ELL2O00472 640 aaPredicted RBP13.19□□□□□ -0.3
HERC4-207ENST00000460168 CHL1O00533 1208 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 TOM1O60784 492 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 RTL5Q5HYW3 569 aaPredicted RBP13.19□□□□□ -0.3
HERC4-207ENST00000460168 ZNF530Q6P9A1 599 aaPredicted RBP13.19□□□□□ -0.3
HERC4-207ENST00000460168 SSH1Q8WYL5 1049 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 ZNF428Q96B54 188 aa13.19□□□□□ -0.3
HERC4-207ENST00000460168 LMO7Q8WWI1 1683 aa13.18□□□□□ -0.3
HERC4-207ENST00000460168 TWISTNBQ3B726 338 aaPredicted RBP13.18□□□□□ -0.3
HERC4-207ENST00000460168 TSPYL6Q8N831 410 aa13.18□□□□□ -0.3
HERC4-207ENST00000460168 SECISBP2LQ93073 1101 aaKnown RBP13.18□□□□□ -0.3
HERC4-207ENST00000460168 PIP4K2BP78356 416 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 PDE3AQ14432 1141 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 C1orf141Q5JVX7 400 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 TSPYL4Q9UJ04 414 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 ALDH1L2Q3SY69 923 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 IL17REQ8NFR9 667 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 MIS18AQ9NYP9 233 aa13.17□□□□□ -0.3
HERC4-207ENST00000460168 LRRC37A3O60309 1634 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms