RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 PCDH11XQ9BZA7 1347 aa21.8■■□□□ 1.08
CD28-203ENST00000458610 PCDH11YQ9BZA8 1340 aa21.8■■□□□ 1.08
CD28-203ENST00000458610 NCAPD2Q15021 1401 aa21.79■■□□□ 1.08
CD28-203ENST00000458610 PLEKHG2Q9H7P9 1386 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 PLSCR1O15162 318 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 DIAPH1O60610 1272 aaKnown RBP21.78■■□□□ 1.08
CD28-203ENST00000458610 IL13P35225 146 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 CFAP53Q96M91 514 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 CAMKK2Q96RR4 588 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 RGPD2P0DJD1 1756 aa21.78■■□□□ 1.08
CD28-203ENST00000458610 DDX10Q13206 875 aaKnown RBP21.76■■□□□ 1.07
CD28-203ENST00000458610 EZH2Q15910 746 aaKnown RBP21.76■■□□□ 1.07
CD28-203ENST00000458610 ACSBG1Q96GR2 724 aa21.76■■□□□ 1.07
CD28-203ENST00000458610 AMOTQ4VCS5 1084 aa21.75■■□□□ 1.07
CD28-203ENST00000458610 PLEKHO1Q53GL0 409 aaPredicted RBP21.75■■□□□ 1.07
CD28-203ENST00000458610 KCNQ2O43526 872 aa21.74■■□□□ 1.07
CD28-203ENST00000458610 NBPF14Q5TI25 921 aa21.73■■□□□ 1.07
CD28-203ENST00000458610 SULT6B1Q6IMI4 303 aa21.73■■□□□ 1.07
CD28-203ENST00000458610 PPP2R1AP30153 589 aa21.72■■□□□ 1.07
CD28-203ENST00000458610 IFNL2Q8IZJ0 200 aa21.72■■□□□ 1.07
CD28-203ENST00000458610 SYTL4Q96C24 671 aaPredicted RBP21.72■■□□□ 1.07
CD28-203ENST00000458610 NUDCQ9Y266 331 aa21.72■■□□□ 1.07
CD28-203ENST00000458610 CYP27B1O15528 508 aa21.71■■□□□ 1.07
CD28-203ENST00000458610 PRIM1P49642 420 aaKnown RBP21.71■■□□□ 1.07
CD28-203ENST00000458610 PTF1AQ7RTS3 328 aa21.71■■□□□ 1.07
CD28-203ENST00000458610 EP400Q96L91 3159 aa21.71■■□□□ 1.07
CD28-203ENST00000458610 TNS1Q9HBL0 1735 aaKnown RBP21.71■■□□□ 1.07
CD28-203ENST00000458610 NKX1-1Q15270 411 aaPredicted RBP21.7■■□□□ 1.06
CD28-203ENST00000458610 HSP90AB1P08238 724 aaKnown RBP21.69■■□□□ 1.06
CD28-203ENST00000458610 RALBP1Q15311 655 aa21.69■■□□□ 1.06
CD28-203ENST00000458610 SBF2Q86WG5 1849 aa21.69■■□□□ 1.06
CD28-203ENST00000458610 KDRP35968 1356 aa21.67■■□□□ 1.06
CD28-203ENST00000458610 U2SURPO15042 1029 aaKnown RBP21.67■■□□□ 1.06
CD28-203ENST00000458610 PHKG2P15735 406 aa21.67■■□□□ 1.06
CD28-203ENST00000458610 HMGB2P26583 209 aaKnown RBP21.67■■□□□ 1.06
CD28-203ENST00000458610 AEBP1Q8IUX7 1158 aa21.67■■□□□ 1.06
CD28-203ENST00000458610 TXNRD1Q16881 649 aa21.66■■□□□ 1.06
CD28-203ENST00000458610 C1orf141Q5JVX7 400 aa21.65■■□□□ 1.06
CD28-203ENST00000458610 ZNF530Q6P9A1 599 aaPredicted RBP21.65■■□□□ 1.06
CD28-203ENST00000458610 NHSQ6T4R5 1651 aa21.65■■□□□ 1.06
CD28-203ENST00000458610 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.05
CD28-203ENST00000458610 HMOX1P09601 288 aa21.64■■□□□ 1.05
CD28-203ENST00000458610 KAT6BQ8WYB5 2073 aa21.64■■□□□ 1.05
CD28-203ENST00000458610 DCAF5Q96JK2 942 aa21.63■■□□□ 1.05
CD28-203ENST00000458610 SLC27A3Q5K4L6 730 aa21.62■■□□□ 1.05
CD28-203ENST00000458610 MPRIPQ6WCQ1 1025 aa21.62■■□□□ 1.05
CD28-203ENST00000458610 PROM2Q8N271 834 aa21.62■■□□□ 1.05
CD28-203ENST00000458610 PKD1L3Q7Z443 1732 aa21.62■■□□□ 1.05
CD28-203ENST00000458610 SMARCC1Q92922 1105 aaPredicted RBP21.61■■□□□ 1.05
CD28-203ENST00000458610 SHANK3Q9BYB0 1731 aa21.6■■□□□ 1.05
CD28-203ENST00000458610 ERVV-2B6SEH9 535 aa21.6■■□□□ 1.05
CD28-203ENST00000458610 TMOD3Q9NYL9 352 aa21.6■■□□□ 1.05
CD28-203ENST00000458610 RGPD3A6NKT7 1758 aaPredicted RBP21.6■■□□□ 1.05
CD28-203ENST00000458610 RGPD4Q7Z3J3 1758 aa21.6■■□□□ 1.05
CD28-203ENST00000458610 COL3A1P02461 1466 aaPredicted RBP21.59■■□□□ 1.05
CD28-203ENST00000458610 U2AF1L5P0DN76 240 aaPredicted RBP21.59■■□□□ 1.05
CD28-203ENST00000458610 U2AF1Q01081 240 aaKnown RBP eCLIP21.59■■□□□ 1.05
CD28-203ENST00000458610 R3HDM1Q15032 1099 aaKnown RBP21.59■■□□□ 1.05
CD28-203ENST00000458610 PSDA5PKW4 1024 aaPredicted RBP21.58■■□□□ 1.05
CD28-203ENST00000458610 AKAP4Q5JQC9 854 aa21.58■■□□□ 1.05
CD28-203ENST00000458610 STK32BQ9NY57 414 aa21.58■■□□□ 1.05
CD28-203ENST00000458610 FCHSD2O94868 740 aa21.56■■□□□ 1.04
CD28-203ENST00000458610 CABP4P57796 275 aa21.56■■□□□ 1.04
CD28-203ENST00000458610 PIGBQ92521 554 aa21.56■■□□□ 1.04
CD28-203ENST00000458610 NEFMP07197 916 aa21.55■■□□□ 1.04
CD28-203ENST00000458610 GAS2L2Q8NHY3 880 aa21.55■■□□□ 1.04
CD28-203ENST00000458610 PNNQ9H307 717 aaKnown RBP21.55■■□□□ 1.04
CD28-203ENST00000458610 BTAF1O14981 1849 aa21.55■■□□□ 1.04
CD28-203ENST00000458610 DOT1LQ8TEK3 1739 aa21.55■■□□□ 1.04
CD28-203ENST00000458610 MYBBP1AQ9BQG0 1328 aaKnown RBP21.55■■□□□ 1.04
CD28-203ENST00000458610 RREB1Q92766 1687 aa21.54■■□□□ 1.04
CD28-203ENST00000458610 CCNL1Q9UK58 526 aaPredicted RBP21.54■■□□□ 1.04
CD28-203ENST00000458610 MTHFSDQ2M296 383 aaKnown RBP21.53■■□□□ 1.04
CD28-203ENST00000458610 PRKAR2BP31323 418 aa21.52■■□□□ 1.04
CD28-203ENST00000458610 SLC15A2Q16348 729 aa21.52■■□□□ 1.04
CD28-203ENST00000458610 RSPH6AQ9H0K4 717 aa21.52■■□□□ 1.04
CD28-203ENST00000458610 PALLDQ8WX93 1383 aa21.51■■□□□ 1.03
CD28-203ENST00000458610 NUP188Q5SRE5 1749 aa21.5■■□□□ 1.03
CD28-203ENST00000458610 PRKRIP1Q9H875 184 aaPredicted RBP21.5■■□□□ 1.03
CD28-203ENST00000458610 LRRC4BQ9NT99 713 aa21.5■■□□□ 1.03
CD28-203ENST00000458610 GNAT3A8MTJ3 354 aa21.49■■□□□ 1.03
CD28-203ENST00000458610 ANO8Q9HCE9 1232 aaPredicted RBP21.49■■□□□ 1.03
CD28-203ENST00000458610 RNMTO43148 476 aaKnown RBP21.48■■□□□ 1.03
CD28-203ENST00000458610 NFATC2IPQ8NCF5 419 aa21.48■■□□□ 1.03
CD28-203ENST00000458610 ATG3Q9NT62 314 aa21.47■■□□□ 1.03
CD28-203ENST00000458610 ASAP1Q9ULH1 1129 aa21.47■■□□□ 1.03
CD28-203ENST00000458610 KDM6AO15550 1401 aaPredicted RBP21.46■■□□□ 1.03
CD28-203ENST00000458610 PHACTR3Q96KR7 559 aa21.46■■□□□ 1.03
CD28-203ENST00000458610 SLC52A2Q9HAB3 445 aa21.46■■□□□ 1.03
CD28-203ENST00000458610 LOC102724428A0A0B4J2F2 783 aa21.45■■□□□ 1.02
CD28-203ENST00000458610 SIK1P57059 783 aa21.45■■□□□ 1.02
CD28-203ENST00000458610 LGR6Q9HBX8 967 aa21.45■■□□□ 1.02
CD28-203ENST00000458610 KCNQ4P56696 695 aa21.44■■□□□ 1.02
CD28-203ENST00000458610 AKT1S1Q96B36 256 aa21.44■■□□□ 1.02
CD28-203ENST00000458610 TFCP2L1Q9NZI6 479 aa21.44■■□□□ 1.02
CD28-203ENST00000458610 MAP3K5Q99683 1374 aa21.44■■□□□ 1.02
CD28-203ENST00000458610 TOGARAM1Q9Y4F4 1720 aa21.43■■□□□ 1.02
CD28-203ENST00000458610 ITGB4P16144 1822 aa21.43■■□□□ 1.02
CD28-203ENST00000458610 ATP6V1AP38606 617 aa21.43■■□□□ 1.02
CD28-203ENST00000458610 RTF1Q92541 710 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms