RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TRHP20396 242 aaPredicted RBP18.94■□□□□ 0.62
LDLR-202ENST00000455727 MTHFSDQ2M296 383 aaKnown RBP18.94■□□□□ 0.62
LDLR-202ENST00000455727 GAS2L2Q8NHY3 880 aa18.94■□□□□ 0.62
LDLR-202ENST00000455727 PTPRCP08575 1304 aa18.94■□□□□ 0.62
LDLR-202ENST00000455727 ANKLE2Q86XL3 938 aa18.94■□□□□ 0.62
LDLR-202ENST00000455727 NFKBIBQ15653 356 aa18.93■□□□□ 0.62
LDLR-202ENST00000455727 SIRT2Q8IXJ6 389 aa18.93■□□□□ 0.62
LDLR-202ENST00000455727 RTF1Q92541 710 aaKnown RBP18.93■□□□□ 0.62
LDLR-202ENST00000455727 LNPKQ9C0E8 428 aa18.92■□□□□ 0.62
LDLR-202ENST00000455727 RGS12O14924 1447 aa18.92■□□□□ 0.62
LDLR-202ENST00000455727 SETD1BQ9UPS6 1966 aaKnown RBP18.92■□□□□ 0.62
LDLR-202ENST00000455727 HOXC9P31274 260 aa18.91■□□□□ 0.62
LDLR-202ENST00000455727 BMP2KLQ5H9B9 411 aa18.91■□□□□ 0.62
LDLR-202ENST00000455727 C1orf115Q9H7X2 142 aa18.91■□□□□ 0.62
LDLR-202ENST00000455727 KRT24Q2M2I5 525 aa18.9■□□□□ 0.62
LDLR-202ENST00000455727 ANKRD45Q5TZF3 282 aa18.9■□□□□ 0.62
LDLR-202ENST00000455727 LRRC37A3O60309 1634 aa18.9■□□□□ 0.62
LDLR-202ENST00000455727 NWD1Q149M9 1564 aa18.89■□□□□ 0.62
LDLR-202ENST00000455727 FOXO3O43524 673 aa18.89■□□□□ 0.61
LDLR-202ENST00000455727 ABTB2Q8N961 1025 aa18.89■□□□□ 0.61
LDLR-202ENST00000455727 C22orf23Q9BZE7 217 aa18.89■□□□□ 0.61
LDLR-202ENST00000455727 RTL1A6NKG5 1358 aa18.89■□□□□ 0.61
LDLR-202ENST00000455727 PHF8Q9UPP1 1060 aa18.88■□□□□ 0.61
LDLR-202ENST00000455727 ADAMTSL3P82987 1691 aa18.87■□□□□ 0.61
LDLR-202ENST00000455727 TSPYL4Q9UJ04 414 aa18.87■□□□□ 0.61
LDLR-202ENST00000455727 RPAP2Q8IXW5 612 aaPredicted RBP18.86■□□□□ 0.61
LDLR-202ENST00000455727 DCTPP1Q9H773 170 aa18.86■□□□□ 0.61
LDLR-202ENST00000455727 CACNA1FO60840 1977 aa18.86■□□□□ 0.61
LDLR-202ENST00000455727 MFAP1P55081 439 aaKnown RBP18.86■□□□□ 0.61
LDLR-202ENST00000455727 LTN1O94822 1766 aa18.86■□□□□ 0.61
LDLR-202ENST00000455727 GNAT3A8MTJ3 354 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 TBC1D2Q9BYX2 928 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 BABAM1Q9NWV8 329 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 SOS1Q07889 1333 aaPredicted RBP18.85■□□□□ 0.61
LDLR-202ENST00000455727 SLC4A2P04920 1241 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 ANKRD44Q8N8A2 993 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 ADGRL3Q9HAR2 1447 aa18.85■□□□□ 0.61
LDLR-202ENST00000455727 ATP10DQ9P241 1426 aa18.84■□□□□ 0.61
LDLR-202ENST00000455727 MIS18AQ9NYP9 233 aa18.84■□□□□ 0.61
LDLR-202ENST00000455727 RBM25P49756 843 aaKnown RBP18.83■□□□□ 0.61
LDLR-202ENST00000455727 NUTM2GQ5VZR2 741 aa18.83■□□□□ 0.61
LDLR-202ENST00000455727 ANTXR1Q9H6X2 564 aa18.83■□□□□ 0.6
LDLR-202ENST00000455727 PHRF1Q9P1Y6 1649 aaKnown RBP18.82■□□□□ 0.6
LDLR-202ENST00000455727 NFAT5O94916 1531 aa18.82■□□□□ 0.6
LDLR-202ENST00000455727 MAP3K5Q99683 1374 aa18.81■□□□□ 0.6
LDLR-202ENST00000455727 IP6K1Q92551 441 aa18.81■□□□□ 0.6
LDLR-202ENST00000455727 MSH6P52701 1360 aa18.81■□□□□ 0.6
LDLR-202ENST00000455727 CCT4P50991 539 aaKnown RBP18.8■□□□□ 0.6
LDLR-202ENST00000455727 CEP85Q6P2H3 762 aa18.8■□□□□ 0.6
LDLR-202ENST00000455727 FAM208AQ9UK61 1670 aaKnown RBP18.79■□□□□ 0.6
LDLR-202ENST00000455727 EIF5BO60841 1220 aaKnown RBP18.79■□□□□ 0.6
LDLR-202ENST00000455727 FRAT2O75474 233 aaPredicted RBP18.79■□□□□ 0.6
LDLR-202ENST00000455727 KCNH5Q8NCM2 988 aa18.79■□□□□ 0.6
LDLR-202ENST00000455727 TAF7Q15545 349 aaPredicted RBP18.78■□□□□ 0.6
LDLR-202ENST00000455727 IL17REQ8NFR9 667 aa18.78■□□□□ 0.6
LDLR-202ENST00000455727 STK31Q9BXU1 1019 aa18.78■□□□□ 0.6
LDLR-202ENST00000455727 NPHP4O75161 1426 aaPredicted RBP18.78■□□□□ 0.6
LDLR-202ENST00000455727 PSME1Q06323 249 aa18.78■□□□□ 0.6
LDLR-202ENST00000455727 CCDC30Q5VVM6 783 aa18.78■□□□□ 0.6
LDLR-202ENST00000455727 PLEKHM2Q8IWE5 1019 aa18.78■□□□□ 0.6
LDLR-202ENST00000455727 G2E3Q7L622 706 aa18.77■□□□□ 0.6
LDLR-202ENST00000455727 C14orf37Q86TY3 774 aa18.77■□□□□ 0.6
LDLR-202ENST00000455727 MEIS3Q99687 375 aa18.77■□□□□ 0.6
LDLR-202ENST00000455727 GSE1Q14687 1217 aa18.76■□□□□ 0.59
LDLR-202ENST00000455727 ESCO1Q5FWF5 840 aa18.76■□□□□ 0.59
LDLR-202ENST00000455727 N4BP2Q86UW6 1770 aaPredicted RBP18.76■□□□□ 0.59
LDLR-202ENST00000455727 SNX21Q969T3 373 aa18.75■□□□□ 0.59
LDLR-202ENST00000455727 LTV1Q96GA3 475 aaPredicted RBP18.75■□□□□ 0.59
LDLR-202ENST00000455727 SLKQ9H2G2 1235 aaPredicted RBP18.75■□□□□ 0.59
LDLR-202ENST00000455727 TBC1D9Q6ZT07 1266 aa18.75■□□□□ 0.59
LDLR-202ENST00000455727 HMMRO75330 724 aa18.74■□□□□ 0.59
LDLR-202ENST00000455727 CEMIPQ8WUJ3 1361 aa18.74■□□□□ 0.59
LDLR-202ENST00000455727 CDC45O75419 566 aa18.74■□□□□ 0.59
LDLR-202ENST00000455727 FLIIQ13045 1269 aa18.73■□□□□ 0.59
LDLR-202ENST00000455727 TTC22Q5TAA0 569 aa18.73■□□□□ 0.59
LDLR-202ENST00000455727 MED1Q15648 1581 aaPredicted RBP18.73■□□□□ 0.59
LDLR-202ENST00000455727 GSPT1P15170 499 aaKnown RBP18.72■□□□□ 0.59
LDLR-202ENST00000455727 HSCBQ8IWL3 235 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 RBM33Q96EV2 1170 aaKnown RBP18.72■□□□□ 0.59
LDLR-202ENST00000455727 F6X3S4 739 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 NBPF6Q5VWK0 638 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 SLC4A10Q6U841 1118 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 NBPF4Q96M43 638 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 SLIT3O75094 1523 aa18.72■□□□□ 0.59
LDLR-202ENST00000455727 PXDNLA1KZ92 1463 aa18.71■□□□□ 0.59
LDLR-202ENST00000455727 GNAI2P04899 355 aa18.71■□□□□ 0.58
LDLR-202ENST00000455727 LMO7Q8WWI1 1683 aa18.71■□□□□ 0.58
LDLR-202ENST00000455727 RGPD2P0DJD1 1756 aa18.7■□□□□ 0.58
LDLR-202ENST00000455727 USHBP1Q8N6Y0 703 aa18.7■□□□□ 0.58
LDLR-202ENST00000455727 GNAI3P08754 354 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 CHMP4AQ9BY43 222 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 NCAPD2Q15021 1401 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 NCOA3Q9Y6Q9 1424 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 FKBP5Q13451 457 aaPredicted RBP18.69■□□□□ 0.58
LDLR-202ENST00000455727 C16orf71Q8IYS4 520 aaPredicted RBP18.69■□□□□ 0.58
LDLR-202ENST00000455727 KIF2CQ99661 725 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 CHMP5Q9NZZ3 219 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 KDM3BQ7LBC6 1761 aa18.69■□□□□ 0.58
LDLR-202ENST00000455727 HOXB7P09629 217 aa18.68■□□□□ 0.58
LDLR-202ENST00000455727 ARHGEF25Q86VW2 580 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms