RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 VIRMAQ69YN4 1812 aaKnown RBP14.56□□□□□ -0.08
SCN9A-205ENST00000454569 NEUROD2Q15784 382 aa14.56□□□□□ -0.08
SCN9A-205ENST00000454569 NLRP2Q9NX02 1062 aa14.56□□□□□ -0.08
SCN9A-205ENST00000454569 NWD2Q9ULI1 1742 aa14.55□□□□□ -0.08
SCN9A-205ENST00000454569 WDR17Q8IZU2 1322 aa14.55□□□□□ -0.08
SCN9A-205ENST00000454569 CSB-PGBD3P0DP91 1061 aa14.55□□□□□ -0.08
SCN9A-205ENST00000454569 IFNLR1Q8IU57 520 aaPredicted RBP14.55□□□□□ -0.08
SCN9A-205ENST00000454569 SPATA31A6Q5VVP1 1343 aa14.54□□□□□ -0.08
SCN9A-205ENST00000454569 SLIT2O94813 1529 aa14.54□□□□□ -0.08
SCN9A-205ENST00000454569 TMPOP42166 694 aaKnown RBP14.53□□□□□ -0.08
SCN9A-205ENST00000454569 FBXO41Q8TF61 875 aa14.53□□□□□ -0.08
SCN9A-205ENST00000454569 C8orf37Q96NL8 207 aa14.53□□□□□ -0.08
SCN9A-205ENST00000454569 EVA1CP58658 441 aa14.52□□□□□ -0.08
SCN9A-205ENST00000454569 MTHFSDQ2M296 383 aaKnown RBP14.52□□□□□ -0.08
SCN9A-205ENST00000454569 TOM1L2Q6ZVM7 507 aa14.52□□□□□ -0.08
SCN9A-205ENST00000454569 MEGF6O75095 1541 aa14.52□□□□□ -0.09
SCN9A-205ENST00000454569 TRIM35Q9UPQ4 493 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 BCL9LQ86UU0 1499 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 ZBED9Q6R2W3 1325 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 WNK3Q9BYP7 1800 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 NGLY1Q96IV0 654 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 USP35Q9P2H5 1018 aa14.51□□□□□ -0.09
SCN9A-205ENST00000454569 ZNF521Q96K83 1311 aa14.5□□□□□ -0.09
SCN9A-205ENST00000454569 MAPK8IP3Q9UPT6 1336 aa14.5□□□□□ -0.09
SCN9A-205ENST00000454569 SHANK3Q9BYB0 1731 aa14.5□□□□□ -0.09
SCN9A-205ENST00000454569 CDCA7LQ96GN5 454 aa14.5□□□□□ -0.09
SCN9A-205ENST00000454569 CARD10Q9BWT7 1032 aa14.5□□□□□ -0.09
SCN9A-205ENST00000454569 CRB1P82279 1406 aa14.49□□□□□ -0.09
SCN9A-205ENST00000454569 CENPBP07199 599 aaPredicted RBP14.49□□□□□ -0.09
SCN9A-205ENST00000454569 RIPK4P57078 832 aa14.49□□□□□ -0.09
SCN9A-205ENST00000454569 NFE2L2Q16236 605 aa14.49□□□□□ -0.09
SCN9A-205ENST00000454569 DCTN1Q14203 1278 aa14.48□□□□□ -0.09
SCN9A-205ENST00000454569 WWC1Q8IX03 1113 aa14.48□□□□□ -0.09
SCN9A-205ENST00000454569 FNBP4Q8N3X1 1017 aaPredicted RBP14.48□□□□□ -0.09
SCN9A-205ENST00000454569 THUMPD2Q9BTF0 503 aaKnown RBP14.48□□□□□ -0.09
SCN9A-205ENST00000454569 PNNQ9H307 717 aaKnown RBP14.48□□□□□ -0.09
SCN9A-205ENST00000454569 PKD1L3Q7Z443 1732 aa14.48□□□□□ -0.09
SCN9A-205ENST00000454569 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.48□□□□□ -0.09
SCN9A-205ENST00000454569 PARP4Q9UKK3 1724 aaKnown RBP14.47□□□□□ -0.09
SCN9A-205ENST00000454569 MEX3CQ5U5Q3 659 aaKnown RBP14.46□□□□□ -0.09
SCN9A-205ENST00000454569 UNC5CLQ8IV45 518 aa14.46□□□□□ -0.09
SCN9A-205ENST00000454569 AFF2P51816 1311 aa14.45□□□□□ -0.1
SCN9A-205ENST00000454569 SPATA31A1Q5TZJ5 1347 aa14.45□□□□□ -0.1
SCN9A-205ENST00000454569 SPATA31A5Q5VU36 1347 aa14.45□□□□□ -0.1
SCN9A-205ENST00000454569 SPATA31A7Q8IWB4 1347 aa14.45□□□□□ -0.1
SCN9A-205ENST00000454569 USP21Q9UK80 565 aa14.45□□□□□ -0.1
SCN9A-205ENST00000454569 TATP17735 454 aaPredicted RBP14.44□□□□□ -0.1
SCN9A-205ENST00000454569 CCDC27Q2M243 656 aa14.44□□□□□ -0.1
SCN9A-205ENST00000454569 MCM10Q7L590 875 aa14.44□□□□□ -0.1
SCN9A-205ENST00000454569 RAPGEF4Q8WZA2 1011 aa14.44□□□□□ -0.1
SCN9A-205ENST00000454569 OVOS2A0A0G2JMS6 1433 aa14.44□□□□□ -0.1
SCN9A-205ENST00000454569 DISP2A7MBM2 1401 aa14.44□□□□□ -0.1
SCN9A-205ENST00000454569 NEFMP07197 916 aa14.43□□□□□ -0.1
SCN9A-205ENST00000454569 SCN11AQ9UI33 1791 aa14.43□□□□□ -0.1
SCN9A-205ENST00000454569 KAT6BQ8WYB5 2073 aa14.43□□□□□ -0.1
SCN9A-205ENST00000454569 IL2RBP14784 551 aa14.43□□□□□ -0.1
SCN9A-205ENST00000454569 LGR6Q9HBX8 967 aa14.43□□□□□ -0.1
SCN9A-205ENST00000454569 GLI3P10071 1580 aa14.42□□□□□ -0.1
SCN9A-205ENST00000454569 CYP27B1O15528 508 aa14.42□□□□□ -0.1
SCN9A-205ENST00000454569 VPS72Q15906 364 aa14.42□□□□□ -0.1
SCN9A-205ENST00000454569 PLEKHO1Q53GL0 409 aaPredicted RBP14.42□□□□□ -0.1
SCN9A-205ENST00000454569 ZNF530Q6P9A1 599 aaPredicted RBP14.42□□□□□ -0.1
SCN9A-205ENST00000454569 IL17REQ8NFR9 667 aa14.42□□□□□ -0.1
SCN9A-205ENST00000454569 GAS2L2Q8NHY3 880 aa14.42□□□□□ -0.1
SCN9A-205ENST00000454569 CCDC9Q9Y3X0 531 aaKnown RBP14.42□□□□□ -0.1
SCN9A-205ENST00000454569 SSUH2Q9Y2M2 353 aa14.41□□□□□ -0.1
SCN9A-205ENST00000454569 ADAMTS7Q9UKP4 1686 aa14.41□□□□□ -0.1
SCN9A-205ENST00000454569 LRRC37A3O60309 1634 aa14.41□□□□□ -0.1
SCN9A-205ENST00000454569 GNAT3A8MTJ3 354 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 GOLGA2Q08379 1002 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 SLFN5Q08AF3 891 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 AMOTQ4VCS5 1084 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 MPRIPQ6WCQ1 1025 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 SIPA1L3O60292 1781 aaPredicted RBP14.4□□□□□ -0.1
SCN9A-205ENST00000454569 MAP3K5Q99683 1374 aa14.4□□□□□ -0.1
SCN9A-205ENST00000454569 SPDYE2BA6NHP3 402 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 SPDYE6P0CI01 402 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 SPDYE2Q495Y8 402 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 WDR63Q8IWG1 891 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 TRMT2AQ8IZ69 625 aaKnown RBP14.39□□□□□ -0.11
SCN9A-205ENST00000454569 ZCRB1Q8TBF4 217 aaKnown RBP14.39□□□□□ -0.11
SCN9A-205ENST00000454569 PHKG2P15735 406 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 FAM98CQ17RN3 349 aaKnown RBP14.39□□□□□ -0.11
SCN9A-205ENST00000454569 AKAP4Q5JQC9 854 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 DUSP27Q5VZP5 1158 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 NGEFQ8N5V2 710 aa14.39□□□□□ -0.11
SCN9A-205ENST00000454569 ATRNO75882 1429 aa14.38□□□□□ -0.11
SCN9A-205ENST00000454569 TOGARAM1Q9Y4F4 1720 aa14.38□□□□□ -0.11
SCN9A-205ENST00000454569 KDM6AO15550 1401 aaPredicted RBP14.38□□□□□ -0.11
SCN9A-205ENST00000454569 TSR2Q969E8 191 aaKnown RBP14.38□□□□□ -0.11
SCN9A-205ENST00000454569 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.38□□□□□ -0.111e-7■■■□□ 17.3
SCN9A-205ENST00000454569 MIS18AQ9NYP9 233 aa14.38□□□□□ -0.11
SCN9A-205ENST00000454569 SPG7Q9UQ90 795 aa14.38□□□□□ -0.11
SCN9A-205ENST00000454569 ITGB4P16144 1822 aa14.37□□□□□ -0.11
SCN9A-205ENST00000454569 DDX54Q8TDD1 881 aaKnown RBP14.37□□□□□ -0.11
SCN9A-205ENST00000454569 BRWD3Q6RI45 1802 aa14.37□□□□□ -0.11
SCN9A-205ENST00000454569 THSD7AQ9UPZ6 1657 aa14.36□□□□□ -0.11
SCN9A-205ENST00000454569 RNMTO43148 476 aaKnown RBP14.36□□□□□ -0.11
SCN9A-205ENST00000454569 ZNF853P0CG23 659 aa14.36□□□□□ -0.11
SCN9A-205ENST00000454569 PDE3BQ13370 1112 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms