RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 RIMBP3CA6NJZ7 1639 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 RIMBP3BA6NNM3 1639 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 RIMBP3Q9UFD9 1639 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 C1orf141Q5JVX7 400 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 CHMP5Q9NZZ3 219 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 IQSEC2Q5JU85 1478 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 ARHGEF28Q8N1W1 1705 aaKnown RBP14.78□□□□□ -0.04
SMPD4-213ENST00000454468 CCDC30Q5VVM6 783 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 PREX1Q8TCU6 1659 aa14.78□□□□□ -0.04
SMPD4-213ENST00000454468 ORAI2Q96SN7 254 aa14.77□□□□□ -0.04
SMPD4-213ENST00000454468 ANO2Q9NQ90 1003 aa14.77□□□□□ -0.04
SMPD4-213ENST00000454468 TMEM131LA2VDJ0 1609 aa14.77□□□□□ -0.05
SMPD4-213ENST00000454468 SURF6O75683 361 aaKnown RBP14.77□□□□□ -0.05
SMPD4-213ENST00000454468 FLIIQ13045 1269 aa14.77□□□□□ -0.05
SMPD4-213ENST00000454468 CHL1O00533 1208 aa14.77□□□□□ -0.05
SMPD4-213ENST00000454468 GNAI2P04899 355 aa14.77□□□□□ -0.05
SMPD4-213ENST00000454468 UBTFL1P0CB47 393 aaPredicted RBP14.77□□□□□ -0.05
SMPD4-213ENST00000454468 CPS1P31327 1500 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 LRRC7Q96NW7 1537 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 PNPLA6Q8IY17 1366 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 FAM135BQ49AJ0 1406 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 PLEKHG3A1L390 1219 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 GLIPR1L2Q4G1C9 344 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 ARHGAP45Q92619 1136 aa14.76□□□□□ -0.05
SMPD4-213ENST00000454468 DDX17Q92841 729 aaKnown RBP14.76□□□□□ -0.05
SMPD4-213ENST00000454468 PHAXQ9H814 394 aaKnown RBP14.76□□□□□ -0.05
SMPD4-213ENST00000454468 LRRFIP2Q9Y608 721 aaKnown RBP14.76□□□□□ -0.05
SMPD4-213ENST00000454468 SETD1BQ9UPS6 1966 aaKnown RBP14.76□□□□□ -0.05
SMPD4-213ENST00000454468 NUTM1Q86Y26 1132 aa14.75□□□□□ -0.05
SMPD4-213ENST00000454468 TBX22Q9Y458 520 aa14.75□□□□□ -0.05
SMPD4-213ENST00000454468 HOXC9P31274 260 aa14.75□□□□□ -0.05
SMPD4-213ENST00000454468 LGR6Q9HBX8 967 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 C9orf78Q9NZ63 289 aaPredicted RBP14.74□□□□□ -0.05
SMPD4-213ENST00000454468 RICTORQ6R327 1708 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 ZNF853P0CG23 659 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 BMP2KLQ5H9B9 411 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 MSH6P52701 1360 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 IFT172Q9UG01 1749 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 TAF7Q15545 349 aaPredicted RBP14.74□□□□□ -0.05
SMPD4-213ENST00000454468 CEP85Q6P2H3 762 aa14.74□□□□□ -0.05
SMPD4-213ENST00000454468 INTS3Q68E01 1043 aaKnown RBP14.73□□□□□ -0.05
SMPD4-213ENST00000454468 GOLGA6L22H0YM25 854 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 PIP4K2AP48426 406 aaPredicted RBP14.73□□□□□ -0.05
SMPD4-213ENST00000454468 PLEKHM2Q8IWE5 1019 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 RPAP2Q8IXW5 612 aaPredicted RBP14.73□□□□□ -0.05
SMPD4-213ENST00000454468 CABLES1Q8TDN4 633 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 TAOK2Q9UL54 1235 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 ATP7BP35670 1465 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 BTBD11A6QL63 1104 aa14.73□□□□□ -0.05
SMPD4-213ENST00000454468 FLT4P35916 1363 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 TRAK2O60296 914 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 MYL6BP14649 208 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 MYO3AQ8NEV4 1616 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 KCNQ3O43525 872 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 SDSP20132 328 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 MCM4P33991 863 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 KCNJ4P48050 445 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 CCT4P50991 539 aaKnown RBP14.72□□□□□ -0.05
SMPD4-213ENST00000454468 ANKRD44Q8N8A2 993 aa14.72□□□□□ -0.05
SMPD4-213ENST00000454468 JARID2Q92833 1246 aaPredicted RBP14.72□□□□□ -0.05
SMPD4-213ENST00000454468 GOLGA6L3A6NEY3 463 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 SRGAP3O43295 1099 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 IL17REQ8NFR9 667 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 CHMP3Q9Y3E7 222 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 NEURL4Q96JN8 1562 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 DTNBO60941 627 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 CHRNA2Q15822 529 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 NBPF6Q5VWK0 638 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 NBPF4Q96M43 638 aa14.71□□□□□ -0.05
SMPD4-213ENST00000454468 SHPRHQ149N8 1683 aa14.71□□□□□ -0.06
SMPD4-213ENST00000454468 GBP4Q96PP9 640 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 LARP6Q9BRS8 491 aaKnown RBP14.7□□□□□ -0.06
SMPD4-213ENST00000454468 CPSF1Q10570 1443 aaKnown RBP14.7□□□□□ -0.06
SMPD4-213ENST00000454468 DIP2BQ9P265 1576 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 ABCC4O15439 1325 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 PI4KAP2A4QPH2 592 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 GNAI3P08754 354 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 NEK4P51957 841 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 VSIG10Q8N0Z9 540 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 PI4KAP1Q8N8J0 262 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 LRRCC1Q9C099 1032 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 DCTPP1Q9H773 170 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 TTC21AQ8NDW8 1320 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 GSPT1P15170 499 aaKnown RBP14.7□□□□□ -0.06
SMPD4-213ENST00000454468 SIL1Q9H173 461 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 CHPF2Q9P2E5 772 aa14.7□□□□□ -0.06
SMPD4-213ENST00000454468 USP6P35125 1406 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 CD2BP2O95400 341 aaKnown RBP14.69□□□□□ -0.06
SMPD4-213ENST00000454468 SLC39A6Q13433 755 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 DDX54Q8TDD1 881 aaKnown RBP14.69□□□□□ -0.06
SMPD4-213ENST00000454468 SRCIN1Q9C0H9 1055 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 NLRP1Q9C000 1473 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 PNMA6EA0A0J9YXQ4 647 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 TTC22Q5TAA0 569 aa14.69□□□□□ -0.06
SMPD4-213ENST00000454468 UPF3BQ9BZI7 483 aaKnown RBP14.69□□□□□ -0.06
SMPD4-213ENST00000454468 AATKQ6ZMQ8 1374 aa14.68□□□□□ -0.06
SMPD4-213ENST00000454468 RAPGEF4Q8WZA2 1011 aa14.68□□□□□ -0.06
SMPD4-213ENST00000454468 COL3A1P02461 1466 aaPredicted RBP14.68□□□□□ -0.06
SMPD4-213ENST00000454468 ST18O60284 1047 aa14.68□□□□□ -0.06
SMPD4-213ENST00000454468 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms