RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 CHAMP1Q96JM3 812 aa10.45□□□□□ -0.74
LSM5-208ENST00000450169 KANK1Q14678 1352 aa10.45□□□□□ -0.74
LSM5-208ENST00000450169 RBM26Q5T8P6 1007 aaKnown RBP10.44□□□□□ -0.74
LSM5-208ENST00000450169 BARGINQ6ZT62 677 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 ZNF467Q7Z7K2 595 aaPredicted RBP10.44□□□□□ -0.74
LSM5-208ENST00000450169 AEBP1Q8IUX7 1158 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 ZGPATQ8N5A5 531 aaKnown RBP10.44□□□□□ -0.74
LSM5-208ENST00000450169 C1orf115Q9H7X2 142 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 IQSEC2Q5JU85 1478 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 ERICH4A6NGS2 130 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 KRT222Q8N1A0 295 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 KIF18AQ8NI77 898 aa10.44□□□□□ -0.74
LSM5-208ENST00000450169 RNF17Q9BXT8 1623 aaKnown RBP10.43□□□□□ -0.74
LSM5-208ENST00000450169 C9orf84Q5VXU9 1444 aa10.43□□□□□ -0.74
LSM5-208ENST00000450169 ANKRD36BQ8N2N9 1353 aa10.43□□□□□ -0.74
LSM5-208ENST00000450169 TCP11L2Q8N4U5 519 aa10.43□□□□□ -0.74
LSM5-208ENST00000450169 RUNDC1Q96C34 613 aa10.43□□□□□ -0.74
LSM5-208ENST00000450169 SHANK2Q9UPX8 1470 aa10.43□□□□□ -0.74
LSM5-208ENST00000450169 CDC45O75419 566 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 SMC4Q9NTJ3 1288 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 ZBTB40Q9NUA8 1239 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 MYOM1P52179 1685 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 UHRF1BP1LA0JNW5 1464 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 POLR3AO14802 1390 aaPredicted RBP10.42□□□□□ -0.74
LSM5-208ENST00000450169 PSEN1P49768 467 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 PYCARDQ9ULZ3 195 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 PHF8Q9UPP1 1060 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 MYO5CQ9NQX4 1742 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 ARHGEF5Q12774 1597 aa10.42□□□□□ -0.74
LSM5-208ENST00000450169 HNRNPMP52272 730 aaKnown RBP eCLIP10.41□□□□□ -0.74
LSM5-208ENST00000450169 FAM193AP78312 1265 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 ATF7IPQ6VMQ6 1270 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 EFCAB3Q8N7B9 438 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 FBXO22Q8NEZ5 403 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 LARP6Q9BRS8 491 aaKnown RBP10.41□□□□□ -0.74
LSM5-208ENST00000450169 SYCP2Q9BX26 1530 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 ST18O60284 1047 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 TPM3P06753 285 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 CREBRFQ8IUR6 639 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 KCNF1Q9H3M0 494 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 ARHGAP5Q13017 1502 aa10.41□□□□□ -0.74
LSM5-208ENST00000450169 CT47B1P0C2W7 299 aaPredicted RBP10.4□□□□□ -0.74
LSM5-208ENST00000450169 CCDC27Q2M243 656 aa10.4□□□□□ -0.74
LSM5-208ENST00000450169 ANKRD45Q5TZF3 282 aa10.4□□□□□ -0.74
LSM5-208ENST00000450169 FOXD4L5Q5VV16 416 aaPredicted RBP10.4□□□□□ -0.74
LSM5-208ENST00000450169 FOXD4L4Q8WXT5 416 aaPredicted RBP10.4□□□□□ -0.74
LSM5-208ENST00000450169 FEZ2Q9UHY8 353 aaPredicted RBP10.4□□□□□ -0.74
LSM5-208ENST00000450169 SMTNL1A8MU46 457 aa10.4□□□□□ -0.75
LSM5-208ENST00000450169 TMEM57Q8N5G2 664 aa10.4□□□□□ -0.75
LSM5-208ENST00000450169 KDM4CQ9H3R0 1056 aa10.4□□□□□ -0.75
LSM5-208ENST00000450169 REREQ9P2R6 1566 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 SHPRHQ149N8 1683 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 KDM4AO75164 1064 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 MLLT3P42568 568 aaPredicted RBP10.39□□□□□ -0.75
LSM5-208ENST00000450169 YY1AP1Q9H869 796 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 EFCC1Q9HA90 598 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 YEATS2Q9ULM3 1422 aa10.39□□□□□ -0.75
LSM5-208ENST00000450169 CHADLQ6NUI6 762 aa10.38□□□□□ -0.75
LSM5-208ENST00000450169 REM2Q8IYK8 340 aaPredicted RBP10.38□□□□□ -0.75
LSM5-208ENST00000450169 TRERF1Q96PN7 1200 aa10.38□□□□□ -0.75
LSM5-208ENST00000450169 HCLS1P14317 486 aaPredicted RBP10.38□□□□□ -0.75
LSM5-208ENST00000450169 BRD2P25440 801 aaKnown RBP10.38□□□□□ -0.75
LSM5-208ENST00000450169 GCC1Q96CN9 775 aa10.38□□□□□ -0.75
LSM5-208ENST00000450169 IQGAP1P46940 1657 aa10.38□□□□□ -0.75
LSM5-208ENST00000450169 TNNT3P45378 269 aaPredicted RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 SSH1Q8WYL5 1049 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 GEMIN8Q9NWZ8 242 aaKnown RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 PLA2R1Q13018 1463 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 SCAF11Q99590 1463 aaKnown RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 GOLGA6L6A8MZA4 724 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 BRD1O95696 1058 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 NAA30Q147X3 362 aaPredicted RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 KRI1Q8N9T8 703 aaKnown RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 ZNF397Q8NF99 534 aaPredicted RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 ZBTB9Q96C00 473 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 AK7Q96M32 723 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 USP26Q9BXU7 913 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 FAM53CQ9NYF3 392 aa10.37□□□□□ -0.75
LSM5-208ENST00000450169 NOB1Q9ULX3 412 aaKnown RBP10.37□□□□□ -0.75
LSM5-208ENST00000450169 CYP2C19P33261 490 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 HNRNPH2P55795 449 aaKnown RBP10.36□□□□□ -0.75
LSM5-208ENST00000450169 RAD51AP2Q09MP3 1159 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 MKRN3Q13064 507 aaKnown RBP10.36□□□□□ -0.75
LSM5-208ENST00000450169 CCDC112Q8NEF3 446 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 CABP2Q9NPB3 220 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 CLTCL1P53675 1640 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 TSPY4P0CV99 314 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 TSPY10P0CW01 314 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 CCDC183Q5T5S1 534 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 TSR2Q969E8 191 aaKnown RBP10.36□□□□□ -0.75
LSM5-208ENST00000450169 C16orf45Q96MC5 204 aaPredicted RBP10.36□□□□□ -0.75
LSM5-208ENST00000450169 PAXBP1Q9Y5B6 917 aa10.36□□□□□ -0.75
LSM5-208ENST00000450169 GADD45BO75293 160 aaPredicted RBP10.35□□□□□ -0.75
LSM5-208ENST00000450169 MMP14P50281 582 aa10.35□□□□□ -0.75
LSM5-208ENST00000450169 KMT5BQ4FZB7 885 aa10.35□□□□□ -0.75
LSM5-208ENST00000450169 AKT1S1Q96B36 256 aa10.35□□□□□ -0.75
LSM5-208ENST00000450169 KDM5AP29375 1690 aaKnown RBP10.35□□□□□ -0.75
LSM5-208ENST00000450169 GSPT1P15170 499 aaKnown RBP10.35□□□□□ -0.75
LSM5-208ENST00000450169 EXOSC9Q06265 439 aaKnown RBP10.35□□□□□ -0.75
LSM5-208ENST00000450169 SPC24Q8NBT2 197 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms