RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	IGHMBP2	P38935	993 aa	Known RBP	10.61	□□□□□ -0.71
HCG18-238	ENST00000449544	FGD1	P98174	961 aa		10.61	□□□□□ -0.71
HCG18-238	ENST00000449544	TXNRD1	Q16881	649 aa		10.61	□□□□□ -0.71
HCG18-238	ENST00000449544	AMOTL1	Q8IY63	956 aa		10.61	□□□□□ -0.71
HCG18-238	ENST00000449544	NLRP3	Q96P20	1036 aa		10.6	□□□□□ -0.71
HCG18-238	ENST00000449544	PPP2R1A	P30153	589 aa		10.6	□□□□□ -0.71
HCG18-238	ENST00000449544	GJA3	Q9Y6H8	435 aa		10.6	□□□□□ -0.71
HCG18-238	ENST00000449544	CNBD1	Q8NA66	436 aa		10.6	□□□□□ -0.71
HCG18-238	ENST00000449544	CLUAP1	Q96AJ1	413 aa		10.6	□□□□□ -0.71
HCG18-238	ENST00000449544	HMMR	O75330	724 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	KCNQ4	P56696	695 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	ARHGEF25	Q86VW2	580 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	EYA1	Q99502	592 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	ABCA6	Q8N139	1617 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	AKAP4	Q5JQC9	854 aa		10.59	□□□□□ -0.71
HCG18-238	ENST00000449544	DZIP3	Q86Y13	1208 aa	Known RBP	10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	PUS7	Q96PZ0	661 aa	Known RBP	10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	DCTN1	Q14203	1278 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	EZH2	Q15910	746 aa	Known RBP	10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	TOMM22	Q9NS69	142 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	TNS3	Q68CZ2	1445 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	CDC42BPA	Q5VT25	1732 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	EAPP	Q56P03	285 aa	Predicted RBP	10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	ANKRD36B	Q8N2N9	1353 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	ZNF408	Q9H9D4	720 aa		10.58	□□□□□ -0.72
HCG18-238	ENST00000449544	GRIN3B	O60391	1043 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	EIF4A2	Q14240	407 aa	Known RBP	10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	CCDC57	Q2TAC2	916 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	CCDC27	Q2M243	656 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	NEUROD6	Q96NK8	337 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	EIF6	P56537	245 aa	Known RBP	10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	GPATCH3	Q96I76	525 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	NYX	Q9GZU5	481 aa		10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	GNL3L	Q9NVN8	582 aa	Known RBP	10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.57	□□□□□ -0.72
HCG18-238	ENST00000449544	SOS2	Q07890	1332 aa	Predicted RBP	10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	LOC102724428	A0A0B4J2F2	783 aa		10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	SIK1	P57059	783 aa		10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	NF2	P35240	595 aa		10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	RBM26	Q5T8P6	1007 aa	Known RBP	10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	OGFOD1	Q8N543	542 aa		10.56	□□□□□ -0.72
HCG18-238	ENST00000449544	NFE2L2	Q16236	605 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	POLR3A	O14802	1390 aa	Predicted RBP	10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	TULP1	O00294	542 aa	Predicted RBP	10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	YY1	P25490	414 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	ERICH6	Q7L0X2	663 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	SBNO1	A3KN83	1393 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	PRR36	Q9H6K5	1346 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	NKTR	P30414	1462 aa	Known RBP	10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	AEBP1	Q8IUX7	1158 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	PRAG1	Q86YV5	1406 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	POLK	Q9UBT6	870 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	ADGRB3	O60242	1522 aa		10.55	□□□□□ -0.72
HCG18-238	ENST00000449544	THUMPD2	Q9BTF0	503 aa	Known RBP	10.54	□□□□□ -0.72
HCG18-238	ENST00000449544	NCOA3	Q9Y6Q9	1424 aa		10.54	□□□□□ -0.72
HCG18-238	ENST00000449544	LARGE2	Q8N3Y3	721 aa		10.54	□□□□□ -0.72
HCG18-238	ENST00000449544	ZC3H12C	Q9C0D7	883 aa	Known RBP	10.54	□□□□□ -0.72
HCG18-238	ENST00000449544		A0A1W2PP64	1363 aa		10.54	□□□□□ -0.72
HCG18-238	ENST00000449544	SLC4A2	P04920	1241 aa		10.54	□□□□□ -0.72
HCG18-238	ENST00000449544	DNAJC10	Q8IXB1	793 aa		10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	CDC42BPB	Q9Y5S2	1711 aa		10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	CASC1	Q6TDU7	716 aa		10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	API5	Q9BZZ5	524 aa	Known RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	EDC4	Q6P2E9	1401 aa	Known RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	CHAF1A	Q13111	956 aa	Predicted RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	TWISTNB	Q3B726	338 aa	Predicted RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	CDC5L	Q99459	802 aa	Known RBP	10.53	□□□□□ -0.72
HCG18-238	ENST00000449544	KIF13A	Q9H1H9	1805 aa		10.52	□□□□□ -0.72
HCG18-238	ENST00000449544	PNPLA6	Q8IY17	1366 aa		10.52	□□□□□ -0.72
HCG18-238	ENST00000449544	MYO1B	O43795	1136 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	MMP10	P09238	476 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	PRKRIP1	Q9H875	184 aa	Predicted RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	ERBB3	P21860	1342 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	NSD2	O96028	1365 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	PDE6B	P35913	854 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	PIP4K2A	P48426	406 aa	Predicted RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	C2CD5	Q86YS7	1000 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	UPF2	Q9HAU5	1272 aa	Known RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	BCORL1	Q5H9F3	1711 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	ANKAR	Q7Z5J8	1434 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	RNF17	Q9BXT8	1623 aa	Known RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	HSP90AA1	P07900	732 aa	Known RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	UBTFL1	P0CB47	393 aa	Predicted RBP	10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	CCDC24	Q8N4L8	307 aa		10.52	□□□□□ -0.73
HCG18-238	ENST00000449544	SLC27A3	Q5K4L6	730 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	MIER1	Q8N108	512 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	ADAMTS8	Q9UP79	889 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	ERVV-2	B6SEH9	535 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	DALRD3	Q5D0E6	543 aa	Known RBP	10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	CCDC136	Q96JN2	1154 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	DBF4	Q9UBU7	674 aa	Predicted RBP	10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	KIDINS220	Q9ULH0	1771 aa		10.51	□□□□□ -0.73
HCG18-238	ENST00000449544	CNKSR1	Q969H4	720 aa		10.5	□□□□□ -0.73
HCG18-238	ENST00000449544	HDAC9	Q9UKV0	1011 aa		10.5	□□□□□ -0.73
HCG18-238	ENST00000449544	SPATA31A1	Q5TZJ5	1347 aa		10.5	□□□□□ -0.73

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