RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 PKD1L3Q7Z443 1732 aa20.19■□□□□ 0.82
HDAC4-204ENST00000446876 DOT1LQ8TEK3 1739 aa20.19■□□□□ 0.82
HDAC4-204ENST00000446876 TATP17735 454 aaPredicted RBP20.18■□□□□ 0.82
HDAC4-204ENST00000446876 EZH2Q15910 746 aaKnown RBP20.18■□□□□ 0.82
HDAC4-204ENST00000446876 ACSBG1Q96GR2 724 aa20.18■□□□□ 0.82
HDAC4-204ENST00000446876 RREB1Q92766 1687 aa20.18■□□□□ 0.82
HDAC4-204ENST00000446876 ZCRB1Q8TBF4 217 aaKnown RBP20.17■□□□□ 0.82
HDAC4-204ENST00000446876 KCNQ2O43526 872 aa20.16■□□□□ 0.82
HDAC4-204ENST00000446876 NUP188Q5SRE5 1749 aa20.16■□□□□ 0.82
HDAC4-204ENST00000446876 BTAF1O14981 1849 aa20.16■□□□□ 0.82
HDAC4-204ENST00000446876 ZEB1P37275 1124 aaPredicted RBP20.15■□□□□ 0.82
HDAC4-204ENST00000446876 MTHFSP49914 203 aa20.15■□□□□ 0.82
HDAC4-204ENST00000446876 CAMKK2Q96RR4 588 aa20.15■□□□□ 0.82
HDAC4-204ENST00000446876 BCL11BQ9C0K0 894 aaPredicted RBP20.15■□□□□ 0.82
HDAC4-204ENST00000446876 IGSF1Q8N6C5 1336 aa20.14■□□□□ 0.81
HDAC4-204ENST00000446876 RGPD3A6NKT7 1758 aaPredicted RBP20.13■□□□□ 0.81
HDAC4-204ENST00000446876 RGPD4Q7Z3J3 1758 aa20.13■□□□□ 0.81
HDAC4-204ENST00000446876 IL13P35225 146 aa20.11■□□□□ 0.81
HDAC4-204ENST00000446876 AEBP1Q8IUX7 1158 aa20.11■□□□□ 0.81
HDAC4-204ENST00000446876 TOGARAM1Q9Y4F4 1720 aa20.1■□□□□ 0.81
HDAC4-204ENST00000446876 PCDH11XQ9BZA7 1347 aa20.1■□□□□ 0.81
HDAC4-204ENST00000446876 PCDH11YQ9BZA8 1340 aa20.1■□□□□ 0.81
HDAC4-204ENST00000446876 COL3A1P02461 1466 aaPredicted RBP20.1■□□□□ 0.81
HDAC4-204ENST00000446876 PARD3Q8TEW0 1356 aa20.09■□□□□ 0.81
HDAC4-204ENST00000446876 CYP27B1O15528 508 aa20.09■□□□□ 0.81
HDAC4-204ENST00000446876 DDX10Q13206 875 aaKnown RBP20.07■□□□□ 0.8
HDAC4-204ENST00000446876 SYTL4Q96C24 671 aaPredicted RBP20.07■□□□□ 0.8
HDAC4-204ENST00000446876 PSDA5PKW4 1024 aaPredicted RBP20.06■□□□□ 0.8
HDAC4-204ENST00000446876 PRIM1P49642 420 aaKnown RBP20.06■□□□□ 0.8
HDAC4-204ENST00000446876 SULT6B1Q6IMI4 303 aa20.06■□□□□ 0.8
HDAC4-204ENST00000446876 ITGB4P16144 1822 aa20.06■□□□□ 0.8
HDAC4-204ENST00000446876 PLSCR1O15162 318 aa20.05■□□□□ 0.8
HDAC4-204ENST00000446876 SPG7Q9UQ90 795 aa20.05■□□□□ 0.8
HDAC4-204ENST00000446876 DIAPH1O60610 1272 aaKnown RBP20.04■□□□□ 0.8
HDAC4-204ENST00000446876 PPP2R1AP30153 589 aa20.04■□□□□ 0.8
HDAC4-204ENST00000446876 PROM2Q8N271 834 aa20.04■□□□□ 0.8
HDAC4-204ENST00000446876 HMOX1P09601 288 aa20.03■□□□□ 0.8
HDAC4-204ENST00000446876 KDRP35968 1356 aa20.03■□□□□ 0.8
HDAC4-204ENST00000446876 R3HDM1Q15032 1099 aaKnown RBP20.02■□□□□ 0.8
HDAC4-204ENST00000446876 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.02■□□□□ 0.88e-7■□□□□ 8.8
HDAC4-204ENST00000446876 PHKG2P15735 406 aa20.01■□□□□ 0.79
HDAC4-204ENST00000446876 TXNRD1Q16881 649 aa20.01■□□□□ 0.79
HDAC4-204ENST00000446876 LY75O60449 1722 aa19.99■□□□□ 0.79
HDAC4-204ENST00000446876 PLEKHG2Q9H7P9 1386 aa19.99■□□□□ 0.79
HDAC4-204ENST00000446876 ANO8Q9HCE9 1232 aaPredicted RBP19.99■□□□□ 0.79
HDAC4-204ENST00000446876 U2SURPO15042 1029 aaKnown RBP19.98■□□□□ 0.79
HDAC4-204ENST00000446876 NKX1-1Q15270 411 aaPredicted RBP19.98■□□□□ 0.79
HDAC4-204ENST00000446876 PLEKHO1Q53GL0 409 aaPredicted RBP19.98■□□□□ 0.79
HDAC4-204ENST00000446876 ZNF530Q6P9A1 599 aaPredicted RBP19.98■□□□□ 0.79
HDAC4-204ENST00000446876 IFNL2Q8IZJ0 200 aa19.98■□□□□ 0.79
HDAC4-204ENST00000446876 PAPPAQ13219 1627 aa19.98■□□□□ 0.79
HDAC4-204ENST00000446876 MPRIPQ6WCQ1 1025 aa19.97■□□□□ 0.79
HDAC4-204ENST00000446876 CFAP53Q96M91 514 aa19.97■□□□□ 0.79
HDAC4-204ENST00000446876 NBPF14Q5TI25 921 aa19.96■□□□□ 0.79
HDAC4-204ENST00000446876 VIRMAQ69YN4 1812 aaKnown RBP19.96■□□□□ 0.79
HDAC4-204ENST00000446876 KDM6AO15550 1401 aaPredicted RBP19.95■□□□□ 0.78
HDAC4-204ENST00000446876 KCNQ4P56696 695 aa19.95■□□□□ 0.78
HDAC4-204ENST00000446876 AMOTQ4VCS5 1084 aa19.95■□□□□ 0.78
HDAC4-204ENST00000446876 LRRC4BQ9NT99 713 aa19.95■□□□□ 0.78
HDAC4-204ENST00000446876 SCN11AQ9UI33 1791 aa19.93■□□□□ 0.78
HDAC4-204ENST00000446876 PIGBQ92521 554 aa19.93■□□□□ 0.78
HDAC4-204ENST00000446876 C1orf141Q5JVX7 400 aa19.92■□□□□ 0.78
HDAC4-204ENST00000446876 TMOD3Q9NYL9 352 aa19.91■□□□□ 0.78
HDAC4-204ENST00000446876 PALLDQ8WX93 1383 aa19.91■□□□□ 0.78
HDAC4-204ENST00000446876 CASZ1Q86V15 1759 aa19.9■□□□□ 0.78
HDAC4-204ENST00000446876 TUBGCP6Q96RT7 1819 aa19.9■□□□□ 0.78
HDAC4-204ENST00000446876 MTHFSDQ2M296 383 aaKnown RBP19.9■□□□□ 0.78
HDAC4-204ENST00000446876 DCAF5Q96JK2 942 aa19.9■□□□□ 0.78
HDAC4-204ENST00000446876 C5P01031 1676 aa19.89■□□□□ 0.77
HDAC4-204ENST00000446876 HSP90AB1P08238 724 aaKnown RBP19.89■□□□□ 0.77
HDAC4-204ENST00000446876 RALBP1Q15311 655 aa19.89■□□□□ 0.77
HDAC4-204ENST00000446876 ZNF827Q17R98 1081 aa19.89■□□□□ 0.77
HDAC4-204ENST00000446876 TAF1LQ8IZX4 1826 aa19.89■□□□□ 0.77
HDAC4-204ENST00000446876 STK32BQ9NY57 414 aa19.89■□□□□ 0.77
HDAC4-204ENST00000446876 CCNL1Q9UK58 526 aaPredicted RBP19.89■□□□□ 0.77
HDAC4-204ENST00000446876 LRP5O75197 1615 aa19.88■□□□□ 0.77
HDAC4-204ENST00000446876 U2AF1L5P0DN76 240 aaPredicted RBP19.88■□□□□ 0.77
HDAC4-204ENST00000446876 U2AF1Q01081 240 aaKnown RBP eCLIP19.88■□□□□ 0.77
HDAC4-204ENST00000446876 SLC27A3Q5K4L6 730 aa19.88■□□□□ 0.77
HDAC4-204ENST00000446876 RSPH6AQ9H0K4 717 aa19.88■□□□□ 0.77
HDAC4-204ENST00000446876 NUDCQ9Y266 331 aa19.88■□□□□ 0.77
HDAC4-204ENST00000446876 ZNF316A6NFI3 1004 aaPredicted RBP19.87■□□□□ 0.77
HDAC4-204ENST00000446876 PRKAR2BP31323 418 aa19.87■□□□□ 0.77
HDAC4-204ENST00000446876 SLC15A2Q16348 729 aa19.87■□□□□ 0.77
HDAC4-204ENST00000446876 PDGFDQ9GZP0 370 aaPredicted RBP19.87■□□□□ 0.77
HDAC4-204ENST00000446876 ASAP1Q9ULH1 1129 aa19.87■□□□□ 0.77
HDAC4-204ENST00000446876 AKAP4Q5JQC9 854 aa19.86■□□□□ 0.77
HDAC4-204ENST00000446876 ADAMTS7Q9UKP4 1686 aa19.85■□□□□ 0.77
HDAC4-204ENST00000446876 ERVV-2B6SEH9 535 aa19.85■□□□□ 0.77
HDAC4-204ENST00000446876 CABP4P57796 275 aa19.85■□□□□ 0.77
HDAC4-204ENST00000446876 MYBBP1AQ9BQG0 1328 aaKnown RBP19.84■□□□□ 0.77
HDAC4-204ENST00000446876 SMARCC1Q92922 1105 aaPredicted RBP19.84■□□□□ 0.77
HDAC4-204ENST00000446876 PHACTR3Q96KR7 559 aa19.84■□□□□ 0.77
HDAC4-204ENST00000446876 LGR6Q9HBX8 967 aa19.84■□□□□ 0.77
HDAC4-204ENST00000446876 ATG3Q9NT62 314 aa19.84■□□□□ 0.77
HDAC4-204ENST00000446876 QSER1Q2KHR3 1735 aa19.84■□□□□ 0.77
HDAC4-204ENST00000446876 AKT1S1Q96B36 256 aa19.83■□□□□ 0.77
HDAC4-204ENST00000446876 MRC1P22897 1456 aa19.82■□□□□ 0.76
HDAC4-204ENST00000446876 RNMTO43148 476 aaKnown RBP19.82■□□□□ 0.76
HDAC4-204ENST00000446876 C4BP0C0L5 1744 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms