RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 USP31Q70CQ4 1352 aa11.21□□□□□ -0.61
LIMCH1-204ENST00000446625 CCNL1Q9UK58 526 aaPredicted RBP11.21□□□□□ -0.61
LIMCH1-204ENST00000446625 CD2APQ9Y5K6 639 aa11.21□□□□□ -0.61
LIMCH1-204ENST00000446625 NSD2O96028 1365 aa11.2□□□□□ -0.62
LIMCH1-204ENST00000446625 ANKRD36BQ8N2N9 1353 aa11.2□□□□□ -0.62
LIMCH1-204ENST00000446625 NME9Q86XW9 330 aa11.2□□□□□ -0.62
LIMCH1-204ENST00000446625 RGPD2P0DJD1 1756 aa11.19□□□□□ -0.62
LIMCH1-204ENST00000446625 KIF3CO14782 793 aa11.19□□□□□ -0.62
LIMCH1-204ENST00000446625 LTV1Q96GA3 475 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-204ENST00000446625 WWC3Q9ULE0 1092 aa11.18□□□□□ -0.62
LIMCH1-204ENST00000446625 TAF1LQ8IZX4 1826 aa11.18□□□□□ -0.62
LIMCH1-204ENST00000446625 C5P01031 1676 aa11.17□□□□□ -0.62
LIMCH1-204ENST00000446625 FAM208AQ9UK61 1670 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-204ENST00000446625 DNAJC5GQ8N7S2 189 aa11.17□□□□□ -0.62
LIMCH1-204ENST00000446625 SBNO2Q9Y2G9 1366 aa11.16□□□□□ -0.62
LIMCH1-204ENST00000446625 APLP1P51693 650 aa11.16□□□□□ -0.62
LIMCH1-204ENST00000446625 IGSF1Q8N6C5 1336 aa11.15□□□□□ -0.62
LIMCH1-204ENST00000446625 CD163L1Q9NR16 1453 aa11.15□□□□□ -0.62
LIMCH1-204ENST00000446625 ZCRB1Q8TBF4 217 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-204ENST00000446625 IP6K1Q92551 441 aa11.15□□□□□ -0.62
LIMCH1-204ENST00000446625 USP47Q96K76 1375 aa11.15□□□□□ -0.63
LIMCH1-204ENST00000446625 UBR3Q6ZT12 1888 aa11.13□□□□□ -0.63
LIMCH1-204ENST00000446625 FLAD1Q8NFF5 587 aa11.13□□□□□ -0.63
LIMCH1-204ENST00000446625 L3MBTL2Q969R5 705 aa11.13□□□□□ -0.63
LIMCH1-204ENST00000446625 MEGF6O75095 1541 aa11.13□□□□□ -0.63
LIMCH1-204ENST00000446625 TOGARAM1Q9Y4F4 1720 aa11.12□□□□□ -0.63
LIMCH1-204ENST00000446625 AMIGO3Q86WK7 504 aa11.12□□□□□ -0.63
LIMCH1-204ENST00000446625 TMC1Q8TDI8 760 aa11.12□□□□□ -0.63
LIMCH1-204ENST00000446625 WDR90Q96KV7 1748 aa11.12□□□□□ -0.63
LIMCH1-204ENST00000446625 TOMM70O94826 608 aa11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 COL13A1Q5TAT6 717 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 SMIM5Q71RC9 77 aa11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 SLC12A5Q9H2X9 1139 aa11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 C4BP0C0L5 1744 aa11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 ROCK2O75116 1388 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 ITGB4P16144 1822 aa11.11□□□□□ -0.63
LIMCH1-204ENST00000446625 EDC4Q6P2E9 1401 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-204ENST00000446625 CICQ96RK0 1608 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-204ENST00000446625 CAPN15O75808 1086 aa11.1□□□□□ -0.63
LIMCH1-204ENST00000446625 FBLN1P23142 703 aa11.1□□□□□ -0.63
LIMCH1-204ENST00000446625 HDGFL2Q7Z4V5 671 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-204ENST00000446625 MAP3K19Q56UN5 1328 aa11.09□□□□□ -0.63
LIMCH1-204ENST00000446625 N4BP2Q86UW6 1770 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-204ENST00000446625 PALLDQ8WX93 1383 aa11.09□□□□□ -0.63
LIMCH1-204ENST00000446625 HOXC9P31274 260 aa11.09□□□□□ -0.63
LIMCH1-204ENST00000446625 NMRK2Q9NPI5 230 aa11.09□□□□□ -0.63
LIMCH1-204ENST00000446625 A0A1W2PP64 1363 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 KIF13BQ9NQT8 1826 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 PHF14O94880 888 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 AMPHP49418 695 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 HTRA3P83110 453 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 NBPF6Q5VWK0 638 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 MPRIPQ6WCQ1 1025 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 AK7Q96M32 723 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 NBPF4Q96M43 638 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 PCNTO95613 3336 aa11.08□□□□□ -0.64
LIMCH1-204ENST00000446625 KIAA1551Q9HCM1 1747 aa11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 HMGB2P26583 209 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 USHBP1Q8N6Y0 703 aa11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 KLRG1Q96E93 195 aa11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 TERF2IPQ9NYB0 399 aa11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 MAP2P11137 1827 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-204ENST00000446625 JMYQ8N9B5 988 aa11.06□□□□□ -0.64
LIMCH1-204ENST00000446625 CGNL1Q0VF96 1302 aa11.06□□□□□ -0.64
LIMCH1-204ENST00000446625 TNS4Q8IZW8 715 aa11.05□□□□□ -0.64
LIMCH1-204ENST00000446625 RBM46Q8TBY0 533 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-204ENST00000446625 RAPGEF4Q8WZA2 1011 aa11.05□□□□□ -0.64
LIMCH1-204ENST00000446625 COG3Q96JB2 828 aa11.05□□□□□ -0.64
LIMCH1-204ENST00000446625 PXDNLA1KZ92 1463 aa11.05□□□□□ -0.64
LIMCH1-204ENST00000446625 BRCA1P38398 1863 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 NSD3Q9BZ95 1437 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 SSFA2P28290 1259 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 PRELPP51888 382 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 ARHGAP27Q6ZUM4 889 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 SMARCC1Q92922 1105 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 SIN3AQ96ST3 1273 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 BCS1LQ9Y276 419 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 PCDH11XQ9BZA7 1347 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 PCDH11YQ9BZA8 1340 aa11.04□□□□□ -0.64
LIMCH1-204ENST00000446625 A0A0G2JLW4 131 aa11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 CYP27B1O15528 508 aa11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 MMP10P09238 476 aa11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 TATP17735 454 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 RRS1Q15050 365 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 LINC00116Q8NCU8 138 aa11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 PIGBQ92521 554 aa11.03□□□□□ -0.64
LIMCH1-204ENST00000446625 ARFGEF1Q9Y6D6 1849 aa11.02□□□□□ -0.65
LIMCH1-204ENST00000446625 RTL1A6NKG5 1358 aa11.02□□□□□ -0.65
LIMCH1-204ENST00000446625 LOC102724428A0A0B4J2F2 783 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 GNPATO15228 680 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 SIK1P57059 783 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 TGFB2P61812 414 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 C9orf131Q5VYM1 1079 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 C16orf71Q8IYS4 520 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 SBF1O95248 1867 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 PKD1L3Q7Z443 1732 aa11.01□□□□□ -0.65
LIMCH1-204ENST00000446625 FCHSD2O94868 740 aa11□□□□□ -0.65
LIMCH1-204ENST00000446625 DPEP1P16444 411 aa11□□□□□ -0.65
LIMCH1-204ENST00000446625 FSTL1Q12841 308 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms