RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 OSBPL2Q9H1P3 480 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 SLKQ9H2G2 1235 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PNMA3Q9UL41 463 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 G3BP2Q9UN86 482 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PCDHB9Q9Y5E1 797 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 CFAP99D6REC4 459 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 LGR5O75473 907 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 S100BP04271 92 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 KCNH2Q12809 1159 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 EGFLAMQ63HQ2 1017 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 NUDT18Q6ZVK8 323 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 LARGE2Q8N3Y3 721 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 GPATCH3Q96I76 525 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 JPH4Q96JJ6 628 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 MAGEC2Q9UBF1 373 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 P4HBP07237 508 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 TNNI2P48788 182 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 SEC13P55735 322 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PPP1R18Q6NYC8 613 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PLPP7Q8NBV4 271 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 C1orf216Q8TAB5 229 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 TINF2Q9BSI4 451 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 CXXC1Q9P0U4 656 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PARP2Q9UGN5 583 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PCDHGC3Q9UN70 934 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 MAP4K4O95819 1239 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 NFE2L2Q16236 605 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 SLC43A3Q8NBI5 491 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 FAM174AQ8TBP5 190 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 HLA-CQ95604 372 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 ARMC5Q96C12 935 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 DUSP9Q99956 384 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 KRTAP17-1Q9BYP8 105 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 PIF1Q9H611 641 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 COL4A3BPQ9Y5P4 624 aa3.14□□□□□ -1.91
CCDC88A-208ENST00000444458 FAM69CQ0P6D2 419 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 HSP90AB4PQ58FF6 505 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 SEPT3Q9UH03 358 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 PTMSP20962 102 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 RAD51AP2Q09MP3 1159 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 MRPL58Q14197 206 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 OXLD1Q5BKU9 147 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 ZNF687Q8N1G0 1237 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 METTL5Q9NRN9 209 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 CHPF2Q9P2E5 772 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 DMGDHQ9UI17 866 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 HDGFP51858 240 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 PLCB3Q01970 1234 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 TCEAL1Q15170 157 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 CKAP2LQ8IYA6 745 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 TBX22Q9Y458 520 aa3.13□□□□□ -1.91
CCDC88A-208ENST00000444458 PPP1R3GB7ZBB8 358 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 DNAJC6O75061 913 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 GCGRP47871 477 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 POTEEQ6S8J3 1075 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 TPCN2Q8NHX9 752 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 TMEM134Q9H6X4 195 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 MRPL42Q9Y6G3 142 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 DNMT3AQ9Y6K1 912 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 FAM13AO94988 1023 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 PARNO95453 639 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 PACS2Q86VP3 889 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 CCDC146Q8IYE0 955 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 CYLDQ9NQC7 956 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 U2SURPO15042 1029 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 PER1O15534 1290 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 PRPF40AO75400 957 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 CENPBP07199 599 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 HSD3B2P26439 372 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 C3orf67Q6ZVT6 689 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 TTC13Q8NBP0 860 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 SLC52A1Q9NWF4 448 aa3.12□□□□□ -1.91
CCDC88A-208ENST00000444458 HRO43593 1189 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CTHP32929 405 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CHMP4BP1P59074 171 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 NAA30Q147X3 362 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CCDC102BQ68D86 513 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 TMC7Q7Z402 723 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SYMPKQ92797 1274 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 CEP89Q96ST8 783 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SPC25Q9HBM1 224 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 GABBR1Q9UBS5 961 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SNPHO15079 494 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SH3BP5O60239 455 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 GTF2IP78347 998 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 FANCCQ00597 558 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 ENOX2Q16206 610 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 MAP7D1Q3KQU3 841 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 TMEM92Q6UXU6 159 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 TAS1R3Q7RTX0 852 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 HS3ST6Q96QI5 342 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SPOCK3Q9BQ16 436 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 IFT57Q9NWB7 429 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 SFI1A8K8P3 1242 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 PTCD1O75127 700 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 OS9Q13438 667 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 RALBP1Q15311 655 aa3.11□□□□□ -1.91
CCDC88A-208ENST00000444458 JAZF1Q86VZ6 243 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms