RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 TTC21AQ8NDW8 1320 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 RRP9O43818 475 aaKnown RBP10.83□□□□□ -0.68
HPS4-206ENST00000439453 NUTM2GQ5VZR2 741 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 POTEAQ6S8J7 498 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 CPDO75976 1380 aa10.83□□□□□ -0.68
HPS4-206ENST00000439453 ILDR2Q71H61 639 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 SPRYD3Q8NCJ5 442 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 AFF2P51816 1311 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 THSD7AQ9UPZ6 1657 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 ADAMTS2O95450 1211 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 NME9Q86XW9 330 aa10.82□□□□□ -0.68
HPS4-206ENST00000439453 TRAK2O60296 914 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 MRE11P49959 708 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 NGEFQ8N5V2 710 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 ZMYND15Q9H091 742 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 NSD3Q9BZ95 1437 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 FAM83GA6ND36 823 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 CDCA8Q53HL2 280 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 ABTB2Q8N961 1025 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 PDZRN3Q9UPQ7 1066 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 KIAA0232Q92628 1395 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 NPC1L1Q9UHC9 1359 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 CHMP5Q9NZZ3 219 aa10.81□□□□□ -0.68
HPS4-206ENST00000439453 C8orf37Q96NL8 207 aa10.8□□□□□ -0.68
HPS4-206ENST00000439453 AAMPQ13685 434 aa10.8□□□□□ -0.68
HPS4-206ENST00000439453 PCDHB15Q9Y5E8 787 aa10.8□□□□□ -0.68
HPS4-206ENST00000439453 FAM208AQ9UK61 1670 aaKnown RBP10.8□□□□□ -0.68
HPS4-206ENST00000439453 LMOD2Q6P5Q4 547 aa10.79□□□□□ -0.68
HPS4-206ENST00000439453 TERF2IPQ9NYB0 399 aa10.79□□□□□ -0.68
HPS4-206ENST00000439453 COL5A2P05997 1499 aaPredicted RBP10.79□□□□□ -0.68
HPS4-206ENST00000439453 HDGFL2Q7Z4V5 671 aaPredicted RBP10.78□□□□□ -0.68
HPS4-206ENST00000439453 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.78□□□□□ -0.68
HPS4-206ENST00000439453 GCP02774 474 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 MYH16Q9H6N6 1097 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 GRPEL1Q9HAV7 217 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 CDK12Q9NYV4 1490 aaPredicted RBP10.78□□□□□ -0.68
HPS4-206ENST00000439453 WWC1Q8IX03 1113 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 PARP4Q9UKK3 1724 aaKnown RBP10.78□□□□□ -0.68
HPS4-206ENST00000439453 RGS12O14924 1447 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 SHANK3Q9BYB0 1731 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 ESPNB1AK53 854 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 FYB1O15117 783 aa10.78□□□□□ -0.68
HPS4-206ENST00000439453 PLEKHG5O94827 1062 aa10.77□□□□□ -0.69
HPS4-206ENST00000439453 MEX3CQ5U5Q3 659 aaKnown RBP10.77□□□□□ -0.69
HPS4-206ENST00000439453 NLRP6P59044 892 aa10.77□□□□□ -0.69
HPS4-206ENST00000439453 RWDD1Q9H446 243 aaPredicted RBP10.77□□□□□ -0.69
HPS4-206ENST00000439453 DDX11L8A8MPP1 907 aa10.77□□□□□ -0.69
HPS4-206ENST00000439453 RLBP1P12271 317 aa10.77□□□□□ -0.69
HPS4-206ENST00000439453 RARSP54136 660 aaKnown RBP10.77□□□□□ -0.69
HPS4-206ENST00000439453 C22orf23Q9BZE7 217 aa10.77□□□□□ -0.69
HPS4-206ENST00000439453 LRRC37A3O60309 1634 aa10.76□□□□□ -0.69
HPS4-206ENST00000439453 ISY1Q9ULR0 285 aaKnown RBP10.76□□□□□ -0.69
HPS4-206ENST00000439453 AATKQ6ZMQ8 1374 aa10.76□□□□□ -0.69
HPS4-206ENST00000439453 TNNQ9UQP3 1299 aa10.76□□□□□ -0.69
HPS4-206ENST00000439453 ERBB4Q15303 1308 aa10.76□□□□□ -0.69
HPS4-206ENST00000439453 ARHGEF25Q86VW2 580 aa10.76□□□□□ -0.69
HPS4-206ENST00000439453 CHRNA2Q15822 529 aa10.75□□□□□ -0.69
HPS4-206ENST00000439453 ZC3H6P61129 1189 aaKnown RBP10.75□□□□□ -0.69
HPS4-206ENST00000439453 NGLY1Q96IV0 654 aa10.75□□□□□ -0.69
HPS4-206ENST00000439453 USP21Q9UK80 565 aa10.75□□□□□ -0.69
HPS4-206ENST00000439453 AXIN2Q9Y2T1 843 aa10.75□□□□□ -0.69
HPS4-206ENST00000439453 ZNF772Q68DY9 489 aaPredicted RBP10.75□□□□□ -0.69
HPS4-206ENST00000439453 PHF23Q9BUL5 403 aaPredicted RBP10.75□□□□□ -0.69
HPS4-206ENST00000439453 MFAP1P55081 439 aaKnown RBP10.74□□□□□ -0.69
HPS4-206ENST00000439453 UNC5CLQ8IV45 518 aa10.74□□□□□ -0.69
HPS4-206ENST00000439453 RGPD1P0DJD0 1748 aa10.74□□□□□ -0.69
HPS4-206ENST00000439453 FBLN1P23142 703 aa10.74□□□□□ -0.69
HPS4-206ENST00000439453 HSCBQ8IWL3 235 aa10.73□□□□□ -0.69
HPS4-206ENST00000439453 GGNBP2Q9H3C7 697 aa10.73□□□□□ -0.69
HPS4-206ENST00000439453 BTG4Q9NY30 223 aa10.73□□□□□ -0.69
HPS4-206ENST00000439453 TRIM44Q96DX7 344 aaPredicted RBP10.73□□□□□ -0.69
HPS4-206ENST00000439453 SBF2Q86WG5 1849 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 VPS72Q15906 364 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 BCL2L13Q9BXK5 485 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 NEUROD2Q15784 382 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 QTRT2Q9H974 415 aaKnown RBP10.72□□□□□ -0.69
HPS4-206ENST00000439453 TPM2P07951 284 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 PRDM11Q9NQV5 511 aa10.72□□□□□ -0.69
HPS4-206ENST00000439453 KCNH5Q8NCM2 988 aa10.71□□□□□ -0.69
HPS4-206ENST00000439453 RRP7AQ9Y3A4 280 aaKnown RBP10.71□□□□□ -0.69
HPS4-206ENST00000439453 SPATA31A5Q5VU36 1347 aa10.71□□□□□ -0.7
HPS4-206ENST00000439453 SPATA31A7Q8IWB4 1347 aa10.71□□□□□ -0.7
HPS4-206ENST00000439453 DDIT3P35638 169 aa10.71□□□□□ -0.7
HPS4-206ENST00000439453 TRPC5Q9UL62 973 aaPredicted RBP10.71□□□□□ -0.7
HPS4-206ENST00000439453 DISP2A7MBM2 1401 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 GAS2L3Q86XJ1 694 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 MAP3K19Q56UN5 1328 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 NSD2O96028 1365 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 TNS1Q9HBL0 1735 aaKnown RBP10.7□□□□□ -0.7
HPS4-206ENST00000439453 HAP1P54257 671 aaPredicted RBP10.7□□□□□ -0.7
HPS4-206ENST00000439453 MVPQ14764 893 aaKnown RBP10.7□□□□□ -0.7
HPS4-206ENST00000439453 GJD4Q96KN9 370 aaPredicted RBP10.7□□□□□ -0.7
HPS4-206ENST00000439453 ONECUT3O60422 494 aaPredicted RBP10.7□□□□□ -0.7
HPS4-206ENST00000439453 RUNDC1Q96C34 613 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 SPATA31A1Q5TZJ5 1347 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 NCAPD2Q15021 1401 aa10.7□□□□□ -0.7
HPS4-206ENST00000439453 WDR63Q8IWG1 891 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 RTL1A6NKG5 1358 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 CRB1P82279 1406 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 RBM6P78332 1123 aaKnown RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms