RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PLEKHH1Q9ULM0 1364 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.81□□□□□ -0.04
TCOF1-205ENST00000439160 MARCH6O60337 910 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 PSMA5P28066 241 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 TBC1D2BQ9UPU7 963 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 COL17A1Q9UMD9 1497 aaPredicted RBP14.81□□□□□ -0.04
TCOF1-205ENST00000439160 TTC21AQ8NDW8 1320 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 PHACTR3Q96KR7 559 aa14.81□□□□□ -0.04
TCOF1-205ENST00000439160 LRRFIP2Q9Y608 721 aaKnown RBP14.81□□□□□ -0.04
TCOF1-205ENST00000439160 CCDC158Q5M9N0 1113 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 CWC27Q6UX04 472 aaKnown RBP14.8□□□□□ -0.04
TCOF1-205ENST00000439160 MAST1Q9Y2H9 1570 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 IL16Q14005 1332 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 DNAAF4Q8WXU2 420 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 ERICH2A1L162 156 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 HIP1O00291 1037 aa14.8□□□□□ -0.04
TCOF1-205ENST00000439160 DBF4Q9UBU7 674 aaPredicted RBP14.8□□□□□ -0.04
TCOF1-205ENST00000439160 ANO8Q9HCE9 1232 aaPredicted RBP14.8□□□□□ -0.04
TCOF1-205ENST00000439160 VPS53Q5VIR6 699 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 LARP1Q6PKG0 1096 aaKnown RBP14.79□□□□□ -0.04
TCOF1-205ENST00000439160 MYD88Q99836 296 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 TMOD3Q9NYL9 352 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 CEP126Q9P2H0 1117 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 BECN2A8MW95 431 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 HSPA2P54652 639 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 FKBP4Q02790 459 aaKnown RBP eCLIP14.79□□□□□ -0.04
TCOF1-205ENST00000439160 TTC39AQ5SRH9 613 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 C8orf58Q8NAV2 365 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 KDM4AO75164 1064 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 TNNQ9UQP3 1299 aa14.79□□□□□ -0.04
TCOF1-205ENST00000439160 DHX16O60231 1041 aaKnown RBP14.78□□□□□ -0.04
TCOF1-205ENST00000439160 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
TCOF1-205ENST00000439160 ABCA8O94911 1581 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 MPHOSPH8Q99549 860 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.78□□□□□ -0.04
TCOF1-205ENST00000439160 PCDHB15Q9Y5E8 787 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 NPATQ14207 1427 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 STARD3NLO95772 234 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 KIF1BPQ96EK5 621 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 MX1P20591 662 aa14.78□□□□□ -0.04
TCOF1-205ENST00000439160 PI4KAP2A4QPH2 592 aa14.77□□□□□ -0.04
TCOF1-205ENST00000439160 PI4KAP1Q8N8J0 262 aa14.77□□□□□ -0.04
TCOF1-205ENST00000439160 ATP10AO60312 1499 aa14.77□□□□□ -0.04
TCOF1-205ENST00000439160 GOLGA6L19H0YKK7 550 aa14.77□□□□□ -0.04
TCOF1-205ENST00000439160 CABLES1Q8TDN4 633 aa14.77□□□□□ -0.04
TCOF1-205ENST00000439160 MCM2P49736 904 aa14.77□□□□□ -0.05
TCOF1-205ENST00000439160 LRRC59Q96AG4 307 aaKnown RBP14.77□□□□□ -0.05
TCOF1-205ENST00000439160 TRAK2O60296 914 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 PIK3C2GO75747 1445 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 KRT24Q2M2I5 525 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 TBX22Q9Y458 520 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 KDM6BO15054 1643 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 PTPRCP08575 1304 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 BICDL1Q6ZP65 573 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 IFNL2Q8IZJ0 200 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 MTMR7Q9Y216 660 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 ABCC1P33527 1531 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 K7ELQ4 463 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-205ENST00000439160 TSPYL6Q8N831 410 aa14.76□□□□□ -0.05
TCOF1-205ENST00000439160 MTHFSDQ2M296 383 aaKnown RBP14.75□□□□□ -0.05
TCOF1-205ENST00000439160 RRP12Q5JTH9 1297 aaKnown RBP14.75□□□□□ -0.05
TCOF1-205ENST00000439160 CYP46A1Q9Y6A2 500 aa14.75□□□□□ -0.05
TCOF1-205ENST00000439160 FMNL2Q96PY5 1086 aa14.75□□□□□ -0.05
TCOF1-205ENST00000439160 TRIM34Q9BYJ4 488 aa14.75□□□□□ -0.05
TCOF1-205ENST00000439160 STK3Q13188 491 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 ZBTB3Q9H5J0 574 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 YEATS2Q9ULM3 1422 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 MAP3K19Q56UN5 1328 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 RLBP1P12271 317 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 KLHL34Q8N239 644 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 PRPF40AO75400 957 aaKnown RBP14.74□□□□□ -0.05
TCOF1-205ENST00000439160 STK11IPQ8N1F8 1099 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 EYA1Q99502 592 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 MEIS3Q99687 375 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 HYPKQ9NX55 129 aa14.74□□□□□ -0.05
TCOF1-205ENST00000439160 UPF3BQ9BZI7 483 aaKnown RBP14.73□□□□□ -0.05
TCOF1-205ENST00000439160 BOLA2Q9H3K6 86 aa14.73□□□□□ -0.05
TCOF1-205ENST00000439160 MAP3K2Q9Y2U5 619 aa14.73□□□□□ -0.05
TCOF1-205ENST00000439160 PES1O00541 588 aaKnown RBP14.73□□□□□ -0.05
TCOF1-205ENST00000439160 A0A087WZG4 1122 aa14.73□□□□□ -0.05
TCOF1-205ENST00000439160 SLC39A6Q13433 755 aa14.73□□□□□ -0.05
TCOF1-205ENST00000439160 CCDC8Q9H0W5 538 aaPredicted RBP14.73□□□□□ -0.05
TCOF1-205ENST00000439160 ATP5J2-PTCD1G3V325 749 aa14.73□□□□□ -0.05
TCOF1-205ENST00000439160 CAVIN1Q6NZI2 390 aaKnown RBP14.73□□□□□ -0.05
TCOF1-205ENST00000439160 FIBPO43427 364 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 GLRX3O76003 335 aaKnown RBP14.72□□□□□ -0.05
TCOF1-205ENST00000439160 SAFBQ15424 915 aaKnown RBP eCLIP14.72□□□□□ -0.05
TCOF1-205ENST00000439160 TSHZ3Q63HK5 1081 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 RNF214Q8ND24 703 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 C19orf44Q9H6X5 657 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 NPHP3Q7Z494 1330 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 FLT4P35916 1363 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 JARID2Q92833 1246 aaPredicted RBP14.72□□□□□ -0.05
TCOF1-205ENST00000439160 MSH6P52701 1360 aa14.72□□□□□ -0.05
TCOF1-205ENST00000439160 JAKMIP1Q96N16 626 aaKnown RBP14.72□□□□□ -0.05
TCOF1-205ENST00000439160 ARHGEF5Q12774 1597 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 GCP02774 474 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.71□□□□□ -0.051e-6■■■□□ 16.8
TCOF1-205ENST00000439160 GCC2Q8IWJ2 1684 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 KAT6BQ8WYB5 2073 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms