RNA–Protein interactions for RNA: ENST00000428962.2

THBS3-202, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 1,833 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-202ENST00000428962 NUCB1Q02818 461 aa17.24■□□□□ 0.35
THBS3-202ENST00000428962 GCC1Q96CN9 775 aa17.24■□□□□ 0.35
THBS3-202ENST00000428962 IGSF1Q8N6C5 1336 aa17.24■□□□□ 0.35
THBS3-202ENST00000428962 SEC24BO95487 1268 aa17.24■□□□□ 0.35
THBS3-202ENST00000428962 CHD2O14647 1828 aaKnown RBP17.23■□□□□ 0.35
THBS3-202ENST00000428962 GAS2L2Q8NHY3 880 aa17.23■□□□□ 0.35
THBS3-202ENST00000428962 TBC1D32Q96NH3 1257 aa17.23■□□□□ 0.35
THBS3-202ENST00000428962 CRB1P82279 1406 aa17.22■□□□□ 0.35
THBS3-202ENST00000428962 RTF1Q92541 710 aaKnown RBP17.22■□□□□ 0.35
THBS3-202ENST00000428962 MARF1Q9Y4F3 1742 aaKnown RBP17.22■□□□□ 0.35
THBS3-202ENST00000428962 DEKP35659 375 aaKnown RBP17.21■□□□□ 0.35
THBS3-202ENST00000428962 SLC4A3P48751 1232 aa17.21■□□□□ 0.35
THBS3-202ENST00000428962 NLRP6P59044 892 aa17.21■□□□□ 0.35
THBS3-202ENST00000428962 MCM10Q7L590 875 aa17.21■□□□□ 0.35
THBS3-202ENST00000428962 CHD1LQ86WJ1 897 aa17.21■□□□□ 0.35
THBS3-202ENST00000428962 RTL1A6NKG5 1358 aa17.21■□□□□ 0.34
THBS3-202ENST00000428962 PTPRCP08575 1304 aa17.2■□□□□ 0.34
THBS3-202ENST00000428962 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
THBS3-202ENST00000428962 LRRC37A3O60309 1634 aa17.18■□□□□ 0.34
THBS3-202ENST00000428962 INTS3Q68E01 1043 aaKnown RBP17.18■□□□□ 0.34
THBS3-202ENST00000428962 EYA1Q99502 592 aa17.18■□□□□ 0.34
THBS3-202ENST00000428962 MTHFSDQ2M296 383 aaKnown RBP17.17■□□□□ 0.34
THBS3-202ENST00000428962 HOXC9P31274 260 aa17.17■□□□□ 0.34
THBS3-202ENST00000428962 ABTB2Q8N961 1025 aa17.17■□□□□ 0.34
THBS3-202ENST00000428962 LNPKQ9C0E8 428 aa17.17■□□□□ 0.34
THBS3-202ENST00000428962 RGS12O14924 1447 aa17.16■□□□□ 0.34
THBS3-202ENST00000428962 ADGRL3Q9HAR2 1447 aa17.16■□□□□ 0.34
THBS3-202ENST00000428962 PHF8Q9UPP1 1060 aa17.16■□□□□ 0.34
THBS3-202ENST00000428962 C1orf115Q9H7X2 142 aa17.15■□□□□ 0.34
THBS3-202ENST00000428962 TSPYL4Q9UJ04 414 aa17.15■□□□□ 0.34
THBS3-202ENST00000428962 BMP2KLQ5H9B9 411 aa17.14■□□□□ 0.34
THBS3-202ENST00000428962 ANKRD45Q5TZF3 282 aa17.14■□□□□ 0.34
THBS3-202ENST00000428962 NWD1Q149M9 1564 aa17.14■□□□□ 0.33
THBS3-202ENST00000428962 NFKBIBQ15653 356 aa17.14■□□□□ 0.33
THBS3-202ENST00000428962 C22orf23Q9BZE7 217 aa17.13■□□□□ 0.33
THBS3-202ENST00000428962 SOS1Q07889 1333 aaPredicted RBP17.13■□□□□ 0.33
THBS3-202ENST00000428962 UBAP1LF5GYI3 381 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 MFAP1P55081 439 aaKnown RBP17.12■□□□□ 0.33
THBS3-202ENST00000428962 KRT24Q2M2I5 525 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 LTN1O94822 1766 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 GNAT3A8MTJ3 354 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 FOXO3O43524 673 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 SIRT2Q8IXJ6 389 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 MAP3K5Q99683 1374 aa17.12■□□□□ 0.33
THBS3-202ENST00000428962 EIF5BO60841 1220 aaKnown RBP17.11■□□□□ 0.33
THBS3-202ENST00000428962 NUTM2GQ5VZR2 741 aa17.11■□□□□ 0.33
THBS3-202ENST00000428962 RPAP2Q8IXW5 612 aaPredicted RBP17.11■□□□□ 0.33
THBS3-202ENST00000428962 BABAM1Q9NWV8 329 aa17.11■□□□□ 0.33
THBS3-202ENST00000428962 NFAT5O94916 1531 aa17.1■□□□□ 0.33
THBS3-202ENST00000428962 MSH6P52701 1360 aa17.1■□□□□ 0.33
THBS3-202ENST00000428962 C14orf37Q86TY3 774 aa17.1■□□□□ 0.33
THBS3-202ENST00000428962 PHRF1Q9P1Y6 1649 aaKnown RBP17.1■□□□□ 0.33
THBS3-202ENST00000428962 ANKRD44Q8N8A2 993 aa17.1■□□□□ 0.33
THBS3-202ENST00000428962 ATP10DQ9P241 1426 aa17.09■□□□□ 0.33
THBS3-202ENST00000428962 SLC4A2P04920 1241 aa17.09■□□□□ 0.33
THBS3-202ENST00000428962 KCNH5Q8NCM2 988 aa17.09■□□□□ 0.33
THBS3-202ENST00000428962 STK31Q9BXU1 1019 aa17.09■□□□□ 0.33
THBS3-202ENST00000428962 DCTPP1Q9H773 170 aa17.09■□□□□ 0.33
THBS3-202ENST00000428962 FAM208AQ9UK61 1670 aaKnown RBP17.09■□□□□ 0.33
THBS3-202ENST00000428962 TOM1O60784 492 aa17.08■□□□□ 0.33
THBS3-202ENST00000428962 CCT4P50991 539 aaKnown RBP17.08■□□□□ 0.33
THBS3-202ENST00000428962 IP6K1Q92551 441 aa17.07■□□□□ 0.32
THBS3-202ENST00000428962 PSME1Q06323 249 aa17.07■□□□□ 0.32
THBS3-202ENST00000428962 TBC1D2Q9BYX2 928 aa17.07■□□□□ 0.32
THBS3-202ENST00000428962 MIS18AQ9NYP9 233 aa17.07■□□□□ 0.32
THBS3-202ENST00000428962 CCDC30Q5VVM6 783 aa17.06■□□□□ 0.32
THBS3-202ENST00000428962 RBM25P49756 843 aaKnown RBP17.05■□□□□ 0.32
THBS3-202ENST00000428962 ESCO1Q5FWF5 840 aa17.05■□□□□ 0.32
THBS3-202ENST00000428962 CEP85Q6P2H3 762 aa17.05■□□□□ 0.32
THBS3-202ENST00000428962 LTV1Q96GA3 475 aaPredicted RBP17.05■□□□□ 0.32
THBS3-202ENST00000428962 HMMRO75330 724 aa17.05■□□□□ 0.32
THBS3-202ENST00000428962 CACNA1FO60840 1977 aa17.04■□□□□ 0.32
THBS3-202ENST00000428962 TAF7Q15545 349 aaPredicted RBP17.03■□□□□ 0.32
THBS3-202ENST00000428962 STRCP1A6NGW2 1772 aa17.03■□□□□ 0.32
THBS3-202ENST00000428962 N4BP2Q86UW6 1770 aaPredicted RBP17.03■□□□□ 0.32
THBS3-202ENST00000428962 CDC45O75419 566 aa17.03■□□□□ 0.32
THBS3-202ENST00000428962 HSCBQ8IWL3 235 aa17.03■□□□□ 0.32
THBS3-202ENST00000428962 MEIS3Q99687 375 aa17.03■□□□□ 0.32
THBS3-202ENST00000428962 PXDNLA1KZ92 1463 aa17.02■□□□□ 0.32
THBS3-202ENST00000428962 KIF1AQ12756 1690 aa17.02■□□□□ 0.32
THBS3-202ENST00000428962 SLIT3O75094 1523 aa17.02■□□□□ 0.32
THBS3-202ENST00000428962 CHMP4AQ9BY43 222 aa17.02■□□□□ 0.31
THBS3-202ENST00000428962 MED1Q15648 1581 aaPredicted RBP17.01■□□□□ 0.31
THBS3-202ENST00000428962 SLKQ9H2G2 1235 aaPredicted RBP17.01■□□□□ 0.31
THBS3-202ENST00000428962 ANTXR1Q9H6X2 564 aa17.01■□□□□ 0.31
THBS3-202ENST00000428962 PIP4K2BP78356 416 aa17■□□□□ 0.31
THBS3-202ENST00000428962 SLC4A10Q6U841 1118 aa17■□□□□ 0.31
THBS3-202ENST00000428962 G2E3Q7L622 706 aa17■□□□□ 0.31
THBS3-202ENST00000428962 PROSER2Q86WR7 435 aaPredicted RBP17■□□□□ 0.31
THBS3-202ENST00000428962 PLEKHM2Q8IWE5 1019 aa17■□□□□ 0.31
THBS3-202ENST00000428962 IL17REQ8NFR9 667 aa17■□□□□ 0.31
THBS3-202ENST00000428962 CEMIPQ8WUJ3 1361 aa17■□□□□ 0.31
THBS3-202ENST00000428962 FRAT2O75474 233 aaPredicted RBP17■□□□□ 0.31
THBS3-202ENST00000428962 FLIIQ13045 1269 aa17■□□□□ 0.31
THBS3-202ENST00000428962 TBC1D9Q6ZT07 1266 aa17■□□□□ 0.31
THBS3-202ENST00000428962 LMO7Q8WWI1 1683 aa17■□□□□ 0.31
THBS3-202ENST00000428962 GNAI3P08754 354 aa16.99■□□□□ 0.31
THBS3-202ENST00000428962 TTC22Q5TAA0 569 aa16.99■□□□□ 0.31
THBS3-202ENST00000428962 RBM33Q96EV2 1170 aaKnown RBP16.99■□□□□ 0.31
THBS3-202ENST00000428962 GNAI2P04899 355 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms