RNA–Protein interactions for RNA: ENST00000426542.6

ARHGEF28-203, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ARHGEF28, Length 6,118 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-203ENST00000426542 CCDC85AQ96PX6 553 aaPredicted RBP21.15■□□□□ 0.98
ARHGEF28-203ENST00000426542 ZSCAN31Q96LW9 406 aaPredicted RBP21.15■□□□□ 0.98
ARHGEF28-203ENST00000426542 LRP2BPQ9P2M1 347 aa21.14■□□□□ 0.98
ARHGEF28-203ENST00000426542 NBPF8Q3BBV2 869 aa21.14■□□□□ 0.97
ARHGEF28-203ENST00000426542 GRIN2BQ13224 1484 aa21.14■□□□□ 0.97
ARHGEF28-203ENST00000426542 CCDC66A2RUB6 948 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 XPCQ01831 940 aaPredicted RBP21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 CFAP45Q9UL16 551 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 NUTM1Q86Y26 1132 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 BMP2KQ9NSY1 1161 aaPredicted RBP21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 ZNF76P36508 570 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 CCDC112Q8NEF3 446 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 BACH2Q9BYV9 841 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 PRDM11Q9NQV5 511 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 ZRSR2Q15696 482 aaKnown RBP21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 GRPEL1Q9HAV7 217 aa21.13■□□□□ 0.97
ARHGEF28-203ENST00000426542 MATR3P43243 847 aaKnown RBP eCLIP21.12■□□□□ 0.971e-6■■■■□ 19.8
ARHGEF28-203ENST00000426542 CEP57L1Q8IYX8 460 aa21.12■□□□□ 0.97
ARHGEF28-203ENST00000426542 IDH1O75874 414 aaKnown RBP21.12■□□□□ 0.97
ARHGEF28-203ENST00000426542 SLC26A8Q96RN1 970 aa21.12■□□□□ 0.97
ARHGEF28-203ENST00000426542 MPHOSPH10O00566 681 aaKnown RBP21.12■□□□□ 0.97
ARHGEF28-203ENST00000426542 NUP62CLQ9H1M0 184 aa21.12■□□□□ 0.97
ARHGEF28-203ENST00000426542 IGHMBP2P38935 993 aaKnown RBP21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 KRT32Q14532 448 aa21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 ENOX2Q16206 610 aaKnown RBP21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 USP5P45974 858 aa21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 CENPHQ9H3R5 247 aa21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 PPP6R1Q9UPN7 881 aa21.11■□□□□ 0.97
ARHGEF28-203ENST00000426542 CASTP20810 708 aaKnown RBP21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 ANKRD18AQ8IVF6 992 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 WASF1Q92558 559 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 EHBP1L1Q8N3D4 1523 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 GNAT3A8MTJ3 354 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 IMMTQ16891 758 aaKnown RBP21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 AIDAQ96BJ3 306 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 DDX11Q96FC9 970 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 ERICH3Q5RHP9 1530 aa21.1■□□□□ 0.97
ARHGEF28-203ENST00000426542 UPF3BQ9BZI7 483 aaKnown RBP21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 PLEKHH2Q8IVE3 1493 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 SLC52A1Q9NWF4 448 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 MIS18AQ9NYP9 233 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 ANKRD30BQ9BXX2 1392 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 FAM193AP78312 1265 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 PLCD4Q9BRC7 762 aa21.09■□□□□ 0.97
ARHGEF28-203ENST00000426542 FCHSD2O94868 740 aa21.08■□□□□ 0.97
ARHGEF28-203ENST00000426542 ANKLE2Q86XL3 938 aa21.08■□□□□ 0.97
ARHGEF28-203ENST00000426542 ERLIN1O75477 346 aa21.08■□□□□ 0.96
ARHGEF28-203ENST00000426542 NFE2L2Q16236 605 aa21.08■□□□□ 0.96
ARHGEF28-203ENST00000426542 TMEM57Q8N5G2 664 aa21.08■□□□□ 0.96
ARHGEF28-203ENST00000426542 TAX1BP1Q86VP1 789 aa21.07■□□□□ 0.96
ARHGEF28-203ENST00000426542 RPAP2Q8IXW5 612 aaPredicted RBP21.07■□□□□ 0.96
ARHGEF28-203ENST00000426542 ATAD2Q6PL18 1390 aa21.07■□□□□ 0.96
ARHGEF28-203ENST00000426542 ZC3H6P61129 1189 aaKnown RBP21.07■□□□□ 0.96
ARHGEF28-203ENST00000426542 PIP4K2BP78356 416 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 ABCF2Q9UG63 623 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 SMTNL1A8MU46 457 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 METTL24Q5JXM2 366 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 EXOC6BQ9Y2D4 811 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 EIF5P55010 431 aaKnown RBP21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 NSD3Q9BZ95 1437 aa21.06■□□□□ 0.96
ARHGEF28-203ENST00000426542 KIAA0754O94854 1291 aa21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 FILIP1Q7Z7B0 1213 aa21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 CEP131Q9UPN4 1083 aa21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 TMPOP42166 694 aaKnown RBP21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 KIAA1328Q86T90 577 aa21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 LRRFIP2Q9Y608 721 aaKnown RBP21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 IQCEQ6IPM2 695 aa21.05■□□□□ 0.96
ARHGEF28-203ENST00000426542 EIF3JO75822 258 aaKnown RBP21.04■□□□□ 0.96
ARHGEF28-203ENST00000426542 STARD3NLO95772 234 aa21.04■□□□□ 0.96
ARHGEF28-203ENST00000426542 CAMK4Q16566 473 aa21.04■□□□□ 0.96
ARHGEF28-203ENST00000426542 ARAP1Q96P48 1450 aa21.04■□□□□ 0.96
ARHGEF28-203ENST00000426542 EPB41L2O43491 1005 aaKnown RBP21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 UQCRHLA0A096LP55 91 aa21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 UQCRHP07919 91 aa21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 DUSP27Q5VZP5 1158 aa21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 MCM10Q7L590 875 aa21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 RPGRIP1LQ68CZ1 1315 aa21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 SMARCA5O60264 1052 aaPredicted RBP21.03■□□□□ 0.96
ARHGEF28-203ENST00000426542 NUDT16Q96DE0 195 aaKnown RBP21.02■□□□□ 0.96
ARHGEF28-203ENST00000426542 SSR1P43307 286 aaKnown RBP21.02■□□□□ 0.96
ARHGEF28-203ENST00000426542 CCDC83Q8IWF9 413 aa21.02■□□□□ 0.96
ARHGEF28-203ENST00000426542 CIZ1Q9ULV3 898 aaPredicted RBP21.02■□□□□ 0.95
ARHGEF28-203ENST00000426542 IBSPP21815 317 aaPredicted RBP21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 MAP3K11Q16584 847 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 TAF4BQ92750 862 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 KIF1BPQ96EK5 621 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 AKAP2Q9Y2D5 859 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 NEBLO76041 1014 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 RAPGEF3O95398 923 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 DESP17661 470 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 MCM4P33991 863 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 SLFN5Q08AF3 891 aa21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 PRPF40BQ6NWY9 871 aaKnown RBP21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 THUMPD2Q9BTF0 503 aaKnown RBP21.01■□□□□ 0.95
ARHGEF28-203ENST00000426542 CFAP100Q494V2 611 aa21■□□□□ 0.95
ARHGEF28-203ENST00000426542 MX1P20591 662 aa21■□□□□ 0.95
ARHGEF28-203ENST00000426542 SEC63Q9UGP8 760 aaKnown RBP21■□□□□ 0.95
ARHGEF28-203ENST00000426542 MYD88Q99836 296 aa21■□□□□ 0.95
ARHGEF28-203ENST00000426542 MINDY4BA8MYZ0 360 aa21■□□□□ 0.95
ARHGEF28-203ENST00000426542 TMOD2Q9NZR1 351 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms