RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 HOXC9P31274 260 aa13.5□□□□□ -0.25
CUX1-205ENST00000425244 RSPH6AQ9H0K4 717 aa13.5□□□□□ -0.25
CUX1-205ENST00000425244 FLT4P35916 1363 aa13.5□□□□□ -0.25
CUX1-205ENST00000425244 USHBP1Q8N6Y0 703 aa13.49□□□□□ -0.25
CUX1-205ENST00000425244 SBNO1A3KN83 1393 aa13.49□□□□□ -0.25
CUX1-205ENST00000425244 IPO8O15397 1037 aaKnown RBP13.49□□□□□ -0.25
CUX1-205ENST00000425244 KCNH5Q8NCM2 988 aa13.49□□□□□ -0.25
CUX1-205ENST00000425244 KIF1AQ12756 1690 aa13.48□□□□□ -0.25
CUX1-205ENST00000425244 MARF1Q9Y4F3 1742 aaKnown RBP13.48□□□□□ -0.25
CUX1-205ENST00000425244 ELL2O00472 640 aaPredicted RBP13.48□□□□□ -0.25
CUX1-205ENST00000425244 KIF16BQ96L93 1317 aa13.48□□□□□ -0.25
CUX1-205ENST00000425244 FRAT2O75474 233 aaPredicted RBP13.48□□□□□ -0.25
CUX1-205ENST00000425244 BECN1Q14457 450 aa13.48□□□□□ -0.25
CUX1-205ENST00000425244 HAP1P54257 671 aaPredicted RBP13.47□□□□□ -0.25
CUX1-205ENST00000425244 SLKQ9H2G2 1235 aaPredicted RBP13.47□□□□□ -0.25
CUX1-205ENST00000425244 NFE2L2Q16236 605 aa13.47□□□□□ -0.25
CUX1-205ENST00000425244 EYA1Q99502 592 aa13.47□□□□□ -0.25
CUX1-205ENST00000425244 PIP4K2BP78356 416 aa13.46□□□□□ -0.26
CUX1-205ENST00000425244 CHRNA2Q15822 529 aa13.46□□□□□ -0.26
CUX1-205ENST00000425244 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.46□□□□□ -0.26
CUX1-205ENST00000425244 LTN1O94822 1766 aa13.46□□□□□ -0.26
CUX1-205ENST00000425244 HDAC1Q13547 482 aaPredicted RBP13.45□□□□□ -0.26
CUX1-205ENST00000425244 LRRC59Q96AG4 307 aaKnown RBP13.45□□□□□ -0.26
CUX1-205ENST00000425244 TRPM3Q9HCF6 1732 aaPredicted RBP13.45□□□□□ -0.26
CUX1-205ENST00000425244 MFAP1P55081 439 aaKnown RBP13.44□□□□□ -0.26
CUX1-205ENST00000425244 DCTN1Q14203 1278 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 ZBTB40Q9NUA8 1239 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 AXIN2Q9Y2T1 843 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 VIRMAQ69YN4 1812 aaKnown RBP13.44□□□□□ -0.26
CUX1-205ENST00000425244 SPATA31A3Q5VYP0 1347 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 FAM83GA6ND36 823 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 TSPYL6Q8N831 410 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 IP6K1Q92551 441 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 TBC1D32Q96NH3 1257 aa13.44□□□□□ -0.26
CUX1-205ENST00000425244 GSE1Q14687 1217 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 ALDH1L2Q3SY69 923 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 ARHGEF25Q86VW2 580 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 TNS3Q68CZ2 1445 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 NFAT5O94916 1531 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 CALD1Q05682 793 aaKnown RBP13.43□□□□□ -0.26
CUX1-205ENST00000425244 C1orf115Q9H7X2 142 aa13.43□□□□□ -0.26
CUX1-205ENST00000425244 PXDNQ92626 1479 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 SPRYD3Q8NCJ5 442 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 LNPKQ9C0E8 428 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 MBIPQ9NS73 344 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 GNAI1P63096 354 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 NBPF6Q5VWK0 638 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 NBPF4Q96M43 638 aa13.42□□□□□ -0.26
CUX1-205ENST00000425244 VAMP4O75379 141 aa13.41□□□□□ -0.26
CUX1-205ENST00000425244 SMC5Q8IY18 1101 aa13.41□□□□□ -0.26
CUX1-205ENST00000425244 ANKRD24Q8TF21 1146 aa13.41□□□□□ -0.26
CUX1-205ENST00000425244 IFT57Q9NWB7 429 aa13.4□□□□□ -0.26
CUX1-205ENST00000425244 ALS2Q96Q42 1657 aa13.4□□□□□ -0.26
CUX1-205ENST00000425244 MED1Q15648 1581 aaPredicted RBP13.4□□□□□ -0.26
CUX1-205ENST00000425244 CSB-PGBD3P0DP91 1061 aa13.4□□□□□ -0.26
CUX1-205ENST00000425244 MRPL50Q8N5N7 158 aaKnown RBP13.4□□□□□ -0.26
CUX1-205ENST00000425244 TBC1D2Q9BYX2 928 aa13.4□□□□□ -0.26
CUX1-205ENST00000425244 SOS2Q07890 1332 aaPredicted RBP13.4□□□□□ -0.26
CUX1-205ENST00000425244 IGSF1Q8N6C5 1336 aa13.4□□□□□ -0.26
CUX1-205ENST00000425244 TWISTNBQ3B726 338 aaPredicted RBP13.39□□□□□ -0.27
CUX1-205ENST00000425244 MCM10Q7L590 875 aa13.39□□□□□ -0.27
CUX1-205ENST00000425244 C22orf23Q9BZE7 217 aa13.39□□□□□ -0.27
CUX1-205ENST00000425244 MTHFSDQ2M296 383 aaKnown RBP13.39□□□□□ -0.27
CUX1-205ENST00000425244 ARHGEF10O15013 1369 aa13.39□□□□□ -0.27
CUX1-205ENST00000425244 KIAA0232Q92628 1395 aa13.39□□□□□ -0.27
CUX1-205ENST00000425244 C8orf58Q8NAV2 365 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 IL27Q8NEV9 243 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 LTBP4Q8N2S1 1624 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 USP54Q70EL1 1684 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 LMOD3Q0VAK6 560 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 ZNF428Q96B54 188 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 PRDM11Q9NQV5 511 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 NLRP2Q9NX02 1062 aa13.38□□□□□ -0.27
CUX1-205ENST00000425244 NUCB1Q02818 461 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 ANKRD45Q5TZF3 282 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 PODXL2Q9NZ53 605 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 RTL1A6NKG5 1358 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 KIF24Q5T7B8 1368 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 SLIT3O75094 1523 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 RGPD5Q99666 1765 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 CHD1LQ86WJ1 897 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 CFAP44Q96MT7 982 aa13.37□□□□□ -0.27
CUX1-205ENST00000425244 RGPD2P0DJD1 1756 aa13.36□□□□□ -0.27
CUX1-205ENST00000425244 ZBTB7BO15156 539 aaPredicted RBP13.36□□□□□ -0.27
CUX1-205ENST00000425244 ZNF853P0CG23 659 aa13.36□□□□□ -0.27
CUX1-205ENST00000425244 UBAP1LF5GYI3 381 aa13.36□□□□□ -0.27
CUX1-205ENST00000425244 RTN4Q9NQC3 1192 aaKnown RBP13.36□□□□□ -0.27
CUX1-205ENST00000425244 ROBO1Q9Y6N7 1651 aa13.36□□□□□ -0.27
CUX1-205ENST00000425244 DLG5Q8TDM6 1919 aa13.35□□□□□ -0.27
CUX1-205ENST00000425244 RGPD1P0DJD0 1748 aa13.35□□□□□ -0.27
CUX1-205ENST00000425244 RTF1Q92541 710 aaKnown RBP13.35□□□□□ -0.27
CUX1-205ENST00000425244 ERBB3P21860 1342 aa13.35□□□□□ -0.27
CUX1-205ENST00000425244 BRPF1P55201 1214 aaPredicted RBP13.35□□□□□ -0.27
CUX1-205ENST00000425244 ARHGAP45Q92619 1136 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 STRN4Q9NRL3 753 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 MIS18AQ9NYP9 233 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 KDRP35968 1356 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 TOM1O60784 492 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 KRT24Q2M2I5 525 aa13.34□□□□□ -0.27
CUX1-205ENST00000425244 PHRF1Q9P1Y6 1649 aaKnown RBP13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms