RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PHTF2Q8N3S3 785 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 PLPP7Q8NBV4 271 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 ZNF395Q9H8N7 513 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-208ENST00000423463 NCAPD3P42695 1498 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 SKIP12755 728 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 SOX11P35716 441 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 TBC1D9Q6ZT07 1266 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 ZNF592Q92610 1267 aa4.5□□□□□ -1.69
VPS13A-208ENST00000423463 SOBPA7XYQ1 873 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 BMP2P12643 396 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 ERVK-9P63128 1117 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 NCOA4Q13772 614 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 RNF20Q5VTR2 975 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 Q6ZVU0 165 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 KDF1Q8NAX2 398 aaPredicted RBP4.49□□□□□ -1.69
VPS13A-208ENST00000423463 RAB6BQ9NRW1 208 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 ATAD2BQ9ULI0 1458 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 SMARCA4P51532 1647 aa4.49□□□□□ -1.69
VPS13A-208ENST00000423463 MCCD1P59942 119 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-208ENST00000423463 CC2D2BQ6DHV5 1058 aa4.48□□□□□ -1.69
VPS13A-208ENST00000423463 OSBPL3Q9H4L5 887 aa4.48□□□□□ -1.69
VPS13A-208ENST00000423463 USP17L5A8MUK1 530 aa4.48□□□□□ -1.69
VPS13A-208ENST00000423463 SNRPBP14678 240 aaKnown RBP4.48□□□□□ -1.69
VPS13A-208ENST00000423463 INSM2Q96T92 566 aaPredicted RBP4.48□□□□□ -1.69
VPS13A-208ENST00000423463 ARHGEF10LQ9HCE6 1279 aa4.48□□□□□ -1.69
VPS13A-208ENST00000423463 SMARCA2P51531 1590 aa4.48□□□□□ -1.69
VPS13A-208ENST00000423463 C11orf95C9JLR9 678 aaPredicted RBP4.47□□□□□ -1.69
VPS13A-208ENST00000423463 ADH1AP07327 375 aa4.47□□□□□ -1.69
VPS13A-208ENST00000423463 C1orf115Q9H7X2 142 aa4.47□□□□□ -1.69
VPS13A-208ENST00000423463 MROH2BQ7Z745 1585 aa4.47□□□□□ -1.69
VPS13A-208ENST00000423463 UPP2O95045 317 aa4.47□□□□□ -1.69
VPS13A-208ENST00000423463 TFIP11Q9UBB9 837 aaKnown RBP4.47□□□□□ -1.69
VPS13A-208ENST00000423463 USP17L3A6NCW0 530 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 USP17L4A6NCW7 530 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 PALM3A6NDB9 673 aaPredicted RBP4.46□□□□□ -1.69
VPS13A-208ENST00000423463 ATP5J2-PTCD1G3V325 749 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 SUPT5HO00267 1087 aaKnown RBP4.46□□□□□ -1.69
VPS13A-208ENST00000423463 CTSOP43234 321 aaPredicted RBP4.46□□□□□ -1.69
VPS13A-208ENST00000423463 USP17L2Q6R6M4 530 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 USP17L1Q7RTZ2 530 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 TSEN34Q9BSV6 310 aaKnown RBP4.46□□□□□ -1.69
VPS13A-208ENST00000423463 CHIC2Q9UKJ5 165 aa4.46□□□□□ -1.69
VPS13A-208ENST00000423463 FIGNL2A6NMB9 653 aa4.46□□□□□ -1.7
VPS13A-208ENST00000423463 SCARF1Q14162 830 aa4.46□□□□□ -1.7
VPS13A-208ENST00000423463 TRIM47Q96LD4 638 aa4.46□□□□□ -1.7
VPS13A-208ENST00000423463 ESF1Q9H501 851 aaKnown RBP4.46□□□□□ -1.7
VPS13A-208ENST00000423463 MEN1O00255 615 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 ATP9BO43861 1147 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 MYCP01106 439 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-208ENST00000423463 RFX1P22670 979 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 ZNF787Q6DD87 383 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 PPP1R12CQ9BZL4 782 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 PEG3Q9GZU2 1588 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 POLMQ9NP87 494 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-208ENST00000423463 MAFBQ9Y5Q3 323 aaPredicted RBP4.45□□□□□ -1.7
VPS13A-208ENST00000423463 DNMT3LQ9UJW3 386 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 HMGXB3Q12766 1538 aa4.45□□□□□ -1.7
VPS13A-208ENST00000423463 A0A1W2PRU2 124 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 SPINT1O43278 529 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 PSME1Q06323 249 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 USP4Q13107 963 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 MAP7D1Q3KQU3 841 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 CYP2U1Q7Z449 544 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 ZNF594Q96JF6 807 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-208ENST00000423463 KIAA1024Q9UPX6 916 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 BAZ1BQ9UIG0 1483 aaKnown RBP4.44□□□□□ -1.7
VPS13A-208ENST00000423463 RSF1Q96T23 1441 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-208ENST00000423463 TTLL8A6PVC2 850 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 MAN1A2O60476 641 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 LMOD1P29536 600 aaPredicted RBP4.44□□□□□ -1.7
VPS13A-208ENST00000423463 PTGIRP43119 386 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 EML3Q32P44 896 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 CCDC82Q8N4S0 544 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 CLDN10P78369 228 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 ETNK1Q9HBU6 452 aa4.44□□□□□ -1.7
VPS13A-208ENST00000423463 IL2RAP01589 272 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 GTF2IP78347 998 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 CDCA8Q53HL2 280 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 CFAP70Q5T0N1 1121 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 FOXD4L5Q5VV16 416 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-208ENST00000423463 NFATC2IPQ8NCF5 419 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 CNKSR1Q969H4 720 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 MKRN1Q9UHC7 482 aaKnown RBP4.43□□□□□ -1.7
VPS13A-208ENST00000423463 SOS2Q07890 1332 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-208ENST00000423463 SCNN1DP51172 638 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 PRICKLE2Q7Z3G6 844 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 RNF217Q8TC41 542 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 SENP2Q9HC62 589 aa4.43□□□□□ -1.7
VPS13A-208ENST00000423463 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-208ENST00000423463 VEGFBP49765 207 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 CCDC125Q86Z20 511 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 ARID3AQ99856 593 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 NOD1Q9Y239 953 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 PCDHGA11Q9Y5H2 935 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 LGR5O75473 907 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 CLN3Q13286 438 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 CRTC2Q53ET0 693 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-208ENST00000423463 OGFOD1Q8N543 542 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 TPCN2Q8NHX9 752 aa4.42□□□□□ -1.7
VPS13A-208ENST00000423463 SERTAD1Q9UHV2 236 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms