RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 IMMTQ16891 758 aaKnown RBP8.03□□□□□ -1.12
SCN1A-204ENST00000423058 FMNL2Q96PY5 1086 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 RAI14Q9P0K7 980 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 CETN1Q12798 172 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 HDGFL1Q5TGJ6 251 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 RPGRQ92834 1020 aaKnown RBP8.03□□□□□ -1.12
SCN1A-204ENST00000423058 TTC21AQ8NDW8 1320 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 KIF21BO75037 1637 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 SMTNL1A8MU46 457 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 CHMP4BP1P59074 171 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 PRDM11Q9NQV5 511 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 LRSAM1Q6UWE0 723 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 GCC1Q96CN9 775 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 LRRCC1Q9C099 1032 aa8.03□□□□□ -1.12
SCN1A-204ENST00000423058 USP8P40818 1118 aa8.02□□□□□ -1.12
SCN1A-204ENST00000423058 IL27Q8NEV9 243 aa8.02□□□□□ -1.12
SCN1A-204ENST00000423058 CCDC148Q8NFR7 591 aa8.02□□□□□ -1.12
SCN1A-204ENST00000423058 PLEKHH2Q8IVE3 1493 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 CCDC196A0A1B0GTZ2 297 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 POLR3DP05423 398 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-204ENST00000423058 DDX23Q9BUQ8 820 aaKnown RBP8.02□□□□□ -1.13
SCN1A-204ENST00000423058 KIF20AO95235 890 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 MCM3P25205 808 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 MKNK2Q9HBH9 465 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 BTBD11A6QL63 1104 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 MYL6BP14649 208 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 WDR78Q5VTH9 848 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 DYDC1Q8WWB3 177 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 TNMDQ9H2S6 317 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 PHAXQ9H814 394 aaKnown RBP8.02□□□□□ -1.13
SCN1A-204ENST00000423058 LRRFIP2Q9Y608 721 aaKnown RBP8.02□□□□□ -1.13
SCN1A-204ENST00000423058 CEP126Q9P2H0 1117 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 MYO1BO43795 1136 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 FERP16591 822 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 EIF5P55010 431 aaKnown RBP8.02□□□□□ -1.13
SCN1A-204ENST00000423058 TMEM266Q2M3C6 531 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 SYNJ2O15056 1496 aa8.02□□□□□ -1.13
SCN1A-204ENST00000423058 SREK1Q8WXA9 508 aaKnown RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 CEP63Q96MT8 703 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 TAOK3Q9H2K8 898 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 KRT85P78386 507 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 MAP3K9P80192 1104 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 MAP2K1Q02750 393 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 GCOM1H8Y6P7 765 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 MYZAPP0CAP1 466 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 MRPS9P82933 396 aaKnown RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 TSNARE1Q96NA8 513 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 STXBP4Q6ZWJ1 553 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 DZIP1Q86YF9 867 aaKnown RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 AIDAQ96BJ3 306 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 CABP2Q9NPB3 220 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 STK11IPQ8N1F8 1099 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 CEBPZQ03701 1054 aaKnown RBP8.01□□□□□ -1.13
SCN1A-204ENST00000423058 FKBP15Q5T1M5 1219 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 HSP90AB3PQ58FF7 597 aa8.01□□□□□ -1.13
SCN1A-204ENST00000423058 BAG4O95429 457 aaKnown RBP8□□□□□ -1.13
SCN1A-204ENST00000423058 WDR33Q9C0J8 1336 aaKnown RBP8□□□□□ -1.13
SCN1A-204ENST00000423058 NEK4P51957 841 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 SPA17Q15506 151 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 FANCIQ9NVI1 1328 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 KIF4AO95239 1232 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 NFKBIBQ15653 356 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 CTNNA2P26232 953 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 CA8P35219 290 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 ZNF530Q6P9A1 599 aaPredicted RBP8□□□□□ -1.13
SCN1A-204ENST00000423058 MAP9Q49MG5 647 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 DDX12PQ92771 950 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 A0A087WZG4 1122 aa8□□□□□ -1.13
SCN1A-204ENST00000423058 U3KPZ7 1027 aaPredicted RBP8□□□□□ -1.13
SCN1A-204ENST00000423058 LARP1Q6PKG0 1096 aaKnown RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 KCNH5Q8NCM2 988 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 MROH2BQ7Z745 1585 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 ZNF444Q8N0Y2 327 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 LRPPRCP42704 1394 aaKnown RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 MRE11P49959 708 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 UTP14AQ9BVJ6 771 aaKnown RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 IFIT1P09914 478 aaKnown RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 BLOC1S2Q6QNY1 142 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 CCDC12Q8WUD4 166 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 SIL1Q9H173 461 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 TMOD3Q9NYL9 352 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 TWISTNBQ3B726 338 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-204ENST00000423058 PPP4R3BQ5MIZ7 849 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 GSTTP1A0A1W2PQM5 241 aa7.99□□□□□ -1.13
SCN1A-204ENST00000423058 HECW1Q76N89 1606 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 SLU7O95391 586 aaKnown RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 GGNBP2Q9H3C7 697 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 EXOC6Q8TAG9 804 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 CFAP57Q96MR6 1250 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 B4DLN1 442 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 MRPL12P52815 198 aaKnown RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 METTL24Q5JXM2 366 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 CACNA2D4Q7Z3S7 1137 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 IQCA1Q86XH1 822 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 WDR70Q9NW82 654 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 DMRT2Q9Y5R5 561 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 CCDC96Q2M329 555 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 SPATA24Q86W54 205 aa7.98□□□□□ -1.13
SCN1A-204ENST00000423058 ZSCAN31Q96LW9 406 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-204ENST00000423058 ABCF2Q9UG63 623 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms