RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NPATQ14207 1427 aa13.04□□□□□ -0.32
USP54-204ENST00000422491 NOLC1Q14978 699 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP54-204ENST00000422491 MBIPQ9NS73 344 aa13.04□□□□□ -0.32
USP54-204ENST00000422491 ELL2O00472 640 aaPredicted RBP13.03□□□□□ -0.32
USP54-204ENST00000422491 NFE2L2Q16236 605 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 ANKRD44Q8N8A2 993 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 SYAP1Q96A49 352 aaPredicted RBP13.03□□□□□ -0.32
USP54-204ENST00000422491 PLEKHG5O94827 1062 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 GNAI1P63096 354 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 CUL4AQ13619 759 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 TWISTNBQ3B726 338 aaPredicted RBP13.03□□□□□ -0.32
USP54-204ENST00000422491 ERC2O15083 957 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 UVSSAQ2YD98 709 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 PHACTR3Q96KR7 559 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 GTPBP4Q9BZE4 634 aaKnown RBP13.03□□□□□ -0.32
USP54-204ENST00000422491 SPTLC3Q9NUV7 552 aa13.03□□□□□ -0.32
USP54-204ENST00000422491 FAM184AQ8NB25 1140 aa13.02□□□□□ -0.32
USP54-204ENST00000422491 ZNF830Q96NB3 372 aaPredicted RBP13.02□□□□□ -0.32
USP54-204ENST00000422491 ZBTB7CA1YPR0 619 aa13.02□□□□□ -0.33
USP54-204ENST00000422491 FKBP5Q13451 457 aaPredicted RBP13.02□□□□□ -0.33
USP54-204ENST00000422491 PHF14O94880 888 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 NEK4P51957 841 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 CBX1P83916 185 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 ATP2B3Q16720 1220 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 C8orf58Q8NAV2 365 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 MCM2P49736 904 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 SAFB2Q14151 953 aaKnown RBP eCLIP13.01□□□□□ -0.33
USP54-204ENST00000422491 CEP85Q6P2H3 762 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 KIF3AQ9Y496 699 aa13.01□□□□□ -0.33
USP54-204ENST00000422491 KIDINS220Q9ULH0 1771 aa13□□□□□ -0.33
USP54-204ENST00000422491 SMARCA5O60264 1052 aaPredicted RBP13□□□□□ -0.33
USP54-204ENST00000422491 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
USP54-204ENST00000422491 RPAP2Q8IXW5 612 aaPredicted RBP13□□□□□ -0.33
USP54-204ENST00000422491 MPNDQ8N594 471 aa13□□□□□ -0.33
USP54-204ENST00000422491 INTS4Q96HW7 963 aaKnown RBP13□□□□□ -0.33
USP54-204ENST00000422491 TTC12Q9H892 705 aaPredicted RBP13□□□□□ -0.33
USP54-204ENST00000422491 TERF2IPQ9NYB0 399 aa13□□□□□ -0.33
USP54-204ENST00000422491 USP25Q9UHP3 1055 aa13□□□□□ -0.33
USP54-204ENST00000422491 CFAP65Q6ZU64 1925 aaKnown RBP13□□□□□ -0.33
USP54-204ENST00000422491 ARHGEF40Q8TER5 1519 aa13□□□□□ -0.33
USP54-204ENST00000422491 ASXL2Q76L83 1435 aa13□□□□□ -0.33
USP54-204ENST00000422491 GADD45BO75293 160 aaPredicted RBP13□□□□□ -0.33
USP54-204ENST00000422491 PPP4R3BQ5MIZ7 849 aa13□□□□□ -0.33
USP54-204ENST00000422491 C17orf53Q8N3J3 647 aaPredicted RBP13□□□□□ -0.33
USP54-204ENST00000422491 RGS12O14924 1447 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 KIF20BQ96Q89 1820 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 A0A0U1RQG5 324 aaPredicted RBP12.99□□□□□ -0.33
USP54-204ENST00000422491 KIF20AO95235 890 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 NEXMIFQ5QGS0 1516 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 CLTCQ00610 1675 aaKnown RBP12.99□□□□□ -0.33
USP54-204ENST00000422491 BCL2L12Q9HB09 334 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 ABCC3O15438 1527 aa12.99□□□□□ -0.33
USP54-204ENST00000422491 ADCY5O95622 1261 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 RTL1A6NKG5 1358 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 PIK3C2BO00750 1634 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 FAM177BA6PVY3 158 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 GDPD2Q9HCC8 539 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 FRMPD1Q5SYB0 1578 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 HMOX1P09601 288 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 USP48Q86UV5 1035 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 OSBPL3Q9H4L5 887 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 POLKQ9UBT6 870 aa12.98□□□□□ -0.33
USP54-204ENST00000422491 LETM1O95202 739 aaPredicted RBP12.97□□□□□ -0.33
USP54-204ENST00000422491 NUTM2DQ5VT03 806 aaPredicted RBP12.97□□□□□ -0.33
USP54-204ENST00000422491 VGFO15240 615 aaPredicted RBP12.97□□□□□ -0.33
USP54-204ENST00000422491 TMEM87AQ8NBN3 555 aa12.97□□□□□ -0.33
USP54-204ENST00000422491 PTPRMP28827 1452 aa12.96□□□□□ -0.33
USP54-204ENST00000422491 APBB1O00213 710 aa12.96□□□□□ -0.33
USP54-204ENST00000422491 PALD1Q9ULE6 856 aa12.96□□□□□ -0.33
USP54-204ENST00000422491 DLG5Q8TDM6 1919 aa12.96□□□□□ -0.33
USP54-204ENST00000422491 RIMS2Q9UQ26 1411 aa12.96□□□□□ -0.34
USP54-204ENST00000422491 CCDC183Q5T5S1 534 aa12.96□□□□□ -0.34
USP54-204ENST00000422491 MSH6P52701 1360 aa12.96□□□□□ -0.34
USP54-204ENST00000422491 FBLN1P23142 703 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 PDE1AP54750 535 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 ANKRD7Q92527 254 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 IL17RAQ96F46 866 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 TUBGCP6Q96RT7 1819 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 HCLS1P14317 486 aaPredicted RBP12.95□□□□□ -0.34
USP54-204ENST00000422491 ANAPC15P60006 121 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 PDCL2Q8N4E4 241 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 HECW2Q9P2P5 1572 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 TCHHQ07283 1943 aa12.95□□□□□ -0.34
USP54-204ENST00000422491 CPSF1Q10570 1443 aaKnown RBP12.95□□□□□ -0.34
USP54-204ENST00000422491 RPAP1Q9BWH6 1393 aaPredicted RBP12.94□□□□□ -0.34
USP54-204ENST00000422491 KDM4AO75164 1064 aa12.94□□□□□ -0.34
USP54-204ENST00000422491 FOXD4L6Q3SYB3 417 aaPredicted RBP12.94□□□□□ -0.34
USP54-204ENST00000422491 FOXD4L3Q6VB84 417 aaPredicted RBP12.94□□□□□ -0.34
USP54-204ENST00000422491 KIAA1524Q8TCG1 905 aa12.94□□□□□ -0.34
USP54-204ENST00000422491 ESYT1Q9BSJ8 1104 aa12.94□□□□□ -0.34
USP54-204ENST00000422491 HDGFL2Q7Z4V5 671 aaPredicted RBP12.94□□□□□ -0.34
USP54-204ENST00000422491 WDR33Q9C0J8 1336 aaKnown RBP12.94□□□□□ -0.34
USP54-204ENST00000422491 MX1P20591 662 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 KRT24Q2M2I5 525 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 MEIS3Q99687 375 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 YTHDC2Q9H6S0 1430 aaKnown RBP12.93□□□□□ -0.34
USP54-204ENST00000422491 CTIFO43310 598 aaKnown RBP12.93□□□□□ -0.34
USP54-204ENST00000422491 IL13P35225 146 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 LMOD3Q0VAK6 560 aa12.93□□□□□ -0.34
USP54-204ENST00000422491 NOL8Q76FK4 1167 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms