RNA–Protein interactions for RNA: ENST00000419459.1

LINC00642-201, long intergenic non-protein coding RNA 642, humanhuman

TSL 2 BASIC

Gene LINC00642, Length 2,026 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00642-201ENST00000419459 SLIT2O94813 1529 aa16.75■□□□□ 0.27
LINC00642-201ENST00000419459 ZBTB47Q9UFB7 747 aaPredicted RBP16.74■□□□□ 0.27
LINC00642-201ENST00000419459 NWD2Q9ULI1 1742 aa16.74■□□□□ 0.27
LINC00642-201ENST00000419459 CCDC136Q96JN2 1154 aa16.74■□□□□ 0.27
LINC00642-201ENST00000419459 MEGF6O75095 1541 aa16.73■□□□□ 0.27
LINC00642-201ENST00000419459 NCAPD2Q15021 1401 aa16.73■□□□□ 0.27
LINC00642-201ENST00000419459 BCL9LQ86UU0 1499 aa16.73■□□□□ 0.27
LINC00642-201ENST00000419459 NBR1Q14596 966 aa16.72■□□□□ 0.27
LINC00642-201ENST00000419459 CRB1P82279 1406 aa16.72■□□□□ 0.27
LINC00642-201ENST00000419459 NEFMP07197 916 aa16.7■□□□□ 0.26
LINC00642-201ENST00000419459 TMPOP42166 694 aaKnown RBP16.7■□□□□ 0.26
LINC00642-201ENST00000419459 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
LINC00642-201ENST00000419459 CCDC9Q9Y3X0 531 aaKnown RBP16.7■□□□□ 0.26
LINC00642-201ENST00000419459 CARD10Q9BWT7 1032 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 PNNQ9H307 717 aaKnown RBP16.69■□□□□ 0.26
LINC00642-201ENST00000419459 USP21Q9UK80 565 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 AFF2P51816 1311 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 PRKCSHP14314 528 aaPredicted RBP16.69■□□□□ 0.26
LINC00642-201ENST00000419459 RIPK4P57078 832 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 UNC5CLQ8IV45 518 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 FNBP4Q8N3X1 1017 aaPredicted RBP16.69■□□□□ 0.26
LINC00642-201ENST00000419459 RAPGEF4Q8WZA2 1011 aa16.69■□□□□ 0.26
LINC00642-201ENST00000419459 DCTN1Q14203 1278 aa16.67■□□□□ 0.26
LINC00642-201ENST00000419459 THUMPD2Q9BTF0 503 aaKnown RBP16.67■□□□□ 0.26
LINC00642-201ENST00000419459 NFE2L2Q16236 605 aa16.67■□□□□ 0.26
LINC00642-201ENST00000419459 TRIM35Q9UPQ4 493 aa16.66■□□□□ 0.26
LINC00642-201ENST00000419459 PARP4Q9UKK3 1724 aaKnown RBP16.66■□□□□ 0.26
LINC00642-201ENST00000419459 SPATA31A1Q5TZJ5 1347 aa16.66■□□□□ 0.26
LINC00642-201ENST00000419459 WWC1Q8IX03 1113 aa16.65■□□□□ 0.26
LINC00642-201ENST00000419459 CDCA7LQ96GN5 454 aa16.65■□□□□ 0.26
LINC00642-201ENST00000419459 WNK3Q9BYP7 1800 aa16.65■□□□□ 0.26
LINC00642-201ENST00000419459 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.65■□□□□ 0.26
LINC00642-201ENST00000419459 VIRMAQ69YN4 1812 aaKnown RBP16.65■□□□□ 0.26
LINC00642-201ENST00000419459 IL2RBP14784 551 aa16.64■□□□□ 0.25
LINC00642-201ENST00000419459 TATP17735 454 aaPredicted RBP16.64■□□□□ 0.25
LINC00642-201ENST00000419459 MCM10Q7L590 875 aa16.64■□□□□ 0.25
LINC00642-201ENST00000419459 SHANK3Q9BYB0 1731 aa16.64■□□□□ 0.25
LINC00642-201ENST00000419459 SPATA31A5Q5VU36 1347 aa16.64■□□□□ 0.25
LINC00642-201ENST00000419459 SPATA31A7Q8IWB4 1347 aa16.64■□□□□ 0.25
LINC00642-201ENST00000419459 SPINK5Q9NQ38 1064 aaPredicted RBP16.63■□□□□ 0.25
LINC00642-201ENST00000419459 PKD1L3Q7Z443 1732 aa16.63■□□□□ 0.25
LINC00642-201ENST00000419459 ZNF521Q96K83 1311 aa16.63■□□□□ 0.25
LINC00642-201ENST00000419459 OVOS2A0A0G2JMS6 1433 aa16.63■□□□□ 0.25
LINC00642-201ENST00000419459 TCERG1O14776 1098 aaKnown RBP16.63■□□□□ 0.25
LINC00642-201ENST00000419459 ZNF530Q6P9A1 599 aaPredicted RBP16.63■□□□□ 0.25
LINC00642-201ENST00000419459 FAM98CQ17RN3 349 aaKnown RBP16.62■□□□□ 0.25
LINC00642-201ENST00000419459 GAS2L2Q8NHY3 880 aa16.62■□□□□ 0.25
LINC00642-201ENST00000419459 VPS72Q15906 364 aa16.61■□□□□ 0.25
LINC00642-201ENST00000419459 PLEKHO1Q53GL0 409 aaPredicted RBP16.61■□□□□ 0.25
LINC00642-201ENST00000419459 PHF23Q9BUL5 403 aaPredicted RBP16.61■□□□□ 0.25
LINC00642-201ENST00000419459 DISP2A7MBM2 1401 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 GLI3P10071 1580 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 KAT6BQ8WYB5 2073 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 CYP27B1O15528 508 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 MS4A1P11836 297 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 MPRIPQ6WCQ1 1025 aa16.6■□□□□ 0.25
LINC00642-201ENST00000419459 DDX54Q8TDD1 881 aaKnown RBP16.6■□□□□ 0.25
LINC00642-201ENST00000419459 MAP3K5Q99683 1374 aa16.59■□□□□ 0.25
LINC00642-201ENST00000419459 A0A0G2JS52 829 aa16.59■□□□□ 0.25
LINC00642-201ENST00000419459 GNAT3A8MTJ3 354 aa16.59■□□□□ 0.25
LINC00642-201ENST00000419459 AMOTQ4VCS5 1084 aa16.59■□□□□ 0.25
LINC00642-201ENST00000419459 ILDR1Q86SU0 546 aaPredicted RBP16.59■□□□□ 0.25
LINC00642-201ENST00000419459 CCDC27Q2M243 656 aa16.58■□□□□ 0.25
LINC00642-201ENST00000419459 LRRC37A3O60309 1634 aa16.58■□□□□ 0.24
LINC00642-201ENST00000419459 C1orf141Q5JVX7 400 aa16.58■□□□□ 0.24
LINC00642-201ENST00000419459 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.24
LINC00642-201ENST00000419459 RTF1Q92541 710 aaKnown RBP16.58■□□□□ 0.24
LINC00642-201ENST00000419459 QTRT2Q9H974 415 aaKnown RBP16.58■□□□□ 0.24
LINC00642-201ENST00000419459 LGR6Q9HBX8 967 aa16.58■□□□□ 0.24
LINC00642-201ENST00000419459 SPG7Q9UQ90 795 aa16.58■□□□□ 0.24
LINC00642-201ENST00000419459 GOLGA2Q08379 1002 aa16.57■□□□□ 0.24
LINC00642-201ENST00000419459 IL17REQ8NFR9 667 aa16.57■□□□□ 0.24
LINC00642-201ENST00000419459 GJD4Q96KN9 370 aaPredicted RBP16.57■□□□□ 0.24
LINC00642-201ENST00000419459 LAS1LQ9Y4W2 734 aaKnown RBP16.57■□□□□ 0.24
LINC00642-201ENST00000419459 PHKG2P15735 406 aa16.57■□□□□ 0.24
LINC00642-201ENST00000419459 ATRNO75882 1429 aa16.56■□□□□ 0.24
LINC00642-201ENST00000419459 AKAP4Q5JQC9 854 aa16.56■□□□□ 0.24
LINC00642-201ENST00000419459 TRPC5Q9UL62 973 aaPredicted RBP16.56■□□□□ 0.24
LINC00642-201ENST00000419459 THRAP3Q9Y2W1 955 aaKnown RBP16.56■□□□□ 0.24
LINC00642-201ENST00000419459 TSR2Q969E8 191 aaKnown RBP16.55■□□□□ 0.24
LINC00642-201ENST00000419459 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.55■□□□□ 0.24
LINC00642-201ENST00000419459 PCDH11XQ9BZA7 1347 aa16.55■□□□□ 0.24
LINC00642-201ENST00000419459 PCDH11YQ9BZA8 1340 aa16.55■□□□□ 0.24
LINC00642-201ENST00000419459 KDM6AO15550 1401 aaPredicted RBP16.55■□□□□ 0.24
LINC00642-201ENST00000419459 NGEFQ8N5V2 710 aa16.55■□□□□ 0.24
LINC00642-201ENST00000419459 MIS18AQ9NYP9 233 aa16.55■□□□□ 0.24
LINC00642-201ENST00000419459 SCN11AQ9UI33 1791 aa16.54■□□□□ 0.24
LINC00642-201ENST00000419459 LMOD3Q0VAK6 560 aa16.54■□□□□ 0.24
LINC00642-201ENST00000419459 DDB1Q16531 1140 aa16.54■□□□□ 0.24
LINC00642-201ENST00000419459 BARGINQ6ZT62 677 aa16.54■□□□□ 0.24
LINC00642-201ENST00000419459 IFNL2Q8IZJ0 200 aa16.54■□□□□ 0.24
LINC00642-201ENST00000419459 TNS2Q63HR2 1409 aa16.53■□□□□ 0.24
LINC00642-201ENST00000419459 EXOC5O00471 708 aa16.53■□□□□ 0.24
LINC00642-201ENST00000419459 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
LINC00642-201ENST00000419459 WDR63Q8IWG1 891 aa16.53■□□□□ 0.24
LINC00642-201ENST00000419459 RGS17Q9UGC6 210 aaPredicted RBP16.53■□□□□ 0.24
LINC00642-201ENST00000419459 RRP1P56182 461 aaKnown RBP16.52■□□□□ 0.24
LINC00642-201ENST00000419459 FAM182BQ5T319 152 aa16.52■□□□□ 0.24
LINC00642-201ENST00000419459 TOGARAM1Q9Y4F4 1720 aa16.52■□□□□ 0.24
LINC00642-201ENST00000419459 THSD7AQ9UPZ6 1657 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms