RNA–Protein interactions for RNA: ENST00000418518.2

LINCMD1-201, Transcript of long intergenic non-protein coding RNA, muscle differentiation 1, humanhuman

TSL 5 BASIC

Gene LINCMD1, Length 462 nt, Biotype lincRNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINCMD1-201ENST00000418518 PAK3O75914 559 aaPredicted RBP11.6□□□□□ -0.55
LINCMD1-201ENST00000418518 MRPL50Q8N5N7 158 aaKnown RBP11.6□□□□□ -0.55
LINCMD1-201ENST00000418518 ABCA3Q99758 1704 aa11.6□□□□□ -0.55
LINCMD1-201ENST00000418518 PLEKHG2Q9H7P9 1386 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 KDM4FA0A1W2PPD8 638 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 MTHFSDQ2M296 383 aaKnown RBP11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 NUTM2GQ5VZR2 741 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 ARHGEF25Q86VW2 580 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 OVOS2A0A0G2JMS6 1433 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 TNS3Q68CZ2 1445 aa11.59□□□□□ -0.55
LINCMD1-201ENST00000418518 MAP3K5Q99683 1374 aa11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 NHSL1Q5SYE7 1610 aa11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 HAP1P54257 671 aaPredicted RBP11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 TWISTNBQ3B726 338 aaPredicted RBP11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 FTSJ3Q8IY81 847 aaKnown RBP11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 TSPYL6Q8N831 410 aa11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 NOB1Q9ULX3 412 aaKnown RBP11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 DDX19BQ9UMR2 479 aa11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 ABCC4O15439 1325 aa11.58□□□□□ -0.56
LINCMD1-201ENST00000418518 FOXO3O43524 673 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 ATF3P18847 181 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 DCTN1Q14203 1278 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 KRT28Q7Z3Y7 464 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 CADPS2Q86UW7 1296 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 BABAM1Q9NWV8 329 aa11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 LAS1LQ9Y4W2 734 aaKnown RBP11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 SOS1Q07889 1333 aaPredicted RBP11.57□□□□□ -0.56
LINCMD1-201ENST00000418518 CEMIPQ8WUJ3 1361 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 RGS12O14924 1447 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 IGHDP01880 384 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 GCP02774 474 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 PKD1L3Q7Z443 1732 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 C8orf58Q8NAV2 365 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 BACH2Q9BYV9 841 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 PCDHB15Q9Y5E8 787 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 SCN11AQ9UI33 1791 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 NPHP3Q7Z494 1330 aa11.56□□□□□ -0.56
LINCMD1-201ENST00000418518 HSPA2P54652 639 aa11.55□□□□□ -0.56
LINCMD1-201ENST00000418518 MCM10Q7L590 875 aa11.55□□□□□ -0.56
LINCMD1-201ENST00000418518 TMEM57Q8N5G2 664 aa11.55□□□□□ -0.56
LINCMD1-201ENST00000418518 GNAT3A8MTJ3 354 aa11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 PDE4AP27815 886 aa11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 HDAC1Q13547 482 aaPredicted RBP11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 RTF1Q92541 710 aaKnown RBP11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 ZBTB40Q9NUA8 1239 aa11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 PARP4Q9UKK3 1724 aaKnown RBP11.54□□□□□ -0.56
LINCMD1-201ENST00000418518 NBPF6Q5VWK0 638 aa11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 NBPF4Q96M43 638 aa11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 API5Q9BZZ5 524 aaKnown RBP11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 CHMP4BQ9H444 224 aaKnown RBP11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 RWDD1Q9H446 243 aaPredicted RBP11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 CPDO75976 1380 aa11.53□□□□□ -0.56
LINCMD1-201ENST00000418518 ITPRIPQ8IWB1 547 aa11.52□□□□□ -0.57
LINCMD1-201ENST00000418518 XPCQ01831 940 aaPredicted RBP11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 IL17REQ8NFR9 667 aa11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 TSPYL4Q9UJ04 414 aa11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 PTPRCP08575 1304 aa11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 ERBB3P21860 1342 aa11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 SPATA31A3Q5VYP0 1347 aa11.51□□□□□ -0.57
LINCMD1-201ENST00000418518 SKAP1Q86WV1 359 aa11.5□□□□□ -0.57
LINCMD1-201ENST00000418518 SMC5Q8IY18 1101 aa11.5□□□□□ -0.57
LINCMD1-201ENST00000418518 ANKRD24Q8TF21 1146 aa11.5□□□□□ -0.57
LINCMD1-201ENST00000418518 LTV1Q96GA3 475 aaPredicted RBP11.5□□□□□ -0.57
LINCMD1-201ENST00000418518 PXDNLA1KZ92 1463 aa11.5□□□□□ -0.57
LINCMD1-201ENST00000418518 ZBTB7BO15156 539 aaPredicted RBP11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 KRT24Q2M2I5 525 aa11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 FAM161AQ3B820 660 aa11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 AMOTQ4VCS5 1084 aa11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 INTS3Q68E01 1043 aaKnown RBP11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 USHBP1Q8N6Y0 703 aa11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 MRC1P22897 1456 aa11.49□□□□□ -0.57
LINCMD1-201ENST00000418518 ELL2O00472 640 aaPredicted RBP11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 TAF7Q15545 349 aaPredicted RBP11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 C8orf34Q49A92 452 aa11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 AKAP4Q5JQC9 854 aa11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 BRINP3Q76B58 766 aa11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 PDZRN3Q9UPQ7 1066 aa11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 SOS2Q07890 1332 aaPredicted RBP11.48□□□□□ -0.57
LINCMD1-201ENST00000418518 ATP10DQ9P241 1426 aa11.47□□□□□ -0.57
LINCMD1-201ENST00000418518 HOXB7P09629 217 aa11.47□□□□□ -0.57
LINCMD1-201ENST00000418518 PLEKHO1Q53GL0 409 aaPredicted RBP11.47□□□□□ -0.57
LINCMD1-201ENST00000418518 LRRC59Q96AG4 307 aaKnown RBP11.47□□□□□ -0.57
LINCMD1-201ENST00000418518 AXIN2Q9Y2T1 843 aa11.47□□□□□ -0.57
LINCMD1-201ENST00000418518 SHANK3Q9BYB0 1731 aa11.46□□□□□ -0.57
LINCMD1-201ENST00000418518 ZNF335Q9H4Z2 1342 aaPredicted RBP11.46□□□□□ -0.57
LINCMD1-201ENST00000418518 MSH5O43196 834 aa11.46□□□□□ -0.57
LINCMD1-201ENST00000418518 MEGF6O75095 1541 aa11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 HEG1Q9ULI3 1381 aa11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 ANP32AP39687 249 aaKnown RBP11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 RGS3P49796 1198 aa11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 LMOD2Q6P5Q4 547 aa11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 ZNF530Q6P9A1 599 aaPredicted RBP11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 AHDC1Q5TGY3 1603 aaPredicted RBP11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 COL22A1Q8NFW1 1626 aaPredicted RBP11.45□□□□□ -0.58
LINCMD1-201ENST00000418518 LAMB4A4D0S4 1761 aa11.44□□□□□ -0.58
LINCMD1-201ENST00000418518 C5P01031 1676 aa11.44□□□□□ -0.58
LINCMD1-201ENST00000418518 DDX17Q92841 729 aaKnown RBP11.44□□□□□ -0.58
LINCMD1-201ENST00000418518 MIS18AQ9NYP9 233 aa11.44□□□□□ -0.58
LINCMD1-201ENST00000418518 GLI3P10071 1580 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms