RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 CRB1P82279 1406 aa20.33■□□□□ 0.84
SHMT2-202ENST00000414700 DCTN1Q14203 1278 aa20.32■□□□□ 0.84
SHMT2-202ENST00000414700 NWD2Q9ULI1 1742 aa20.32■□□□□ 0.84
SHMT2-202ENST00000414700 NEFLP07196 543 aa20.32■□□□□ 0.84
SHMT2-202ENST00000414700 CARD10Q9BWT7 1032 aa20.32■□□□□ 0.84
SHMT2-202ENST00000414700 GOLGA2Q08379 1002 aa20.31■□□□□ 0.84
SHMT2-202ENST00000414700 NCBP3Q53F19 620 aaKnown RBP20.31■□□□□ 0.84
SHMT2-202ENST00000414700 RAPGEF4Q8WZA2 1011 aa20.31■□□□□ 0.84
SHMT2-202ENST00000414700 NGLY1Q96IV0 654 aa20.31■□□□□ 0.84
SHMT2-202ENST00000414700 PDE3BQ13370 1112 aa20.29■□□□□ 0.84
SHMT2-202ENST00000414700 GAS2L2Q8NHY3 880 aa20.29■□□□□ 0.84
SHMT2-202ENST00000414700 MCM10Q7L590 875 aa20.29■□□□□ 0.84
SHMT2-202ENST00000414700 BCL9LQ86UU0 1499 aa20.28■□□□□ 0.84
SHMT2-202ENST00000414700 TATP17735 454 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-202ENST00000414700 SLFN5Q08AF3 891 aa20.27■□□□□ 0.84
SHMT2-202ENST00000414700 PLEKHO1Q53GL0 409 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-202ENST00000414700 WDR63Q8IWG1 891 aa20.27■□□□□ 0.84
SHMT2-202ENST00000414700 DUSP27Q5VZP5 1158 aa20.26■□□□□ 0.83
SHMT2-202ENST00000414700 PARP4Q9UKK3 1724 aaKnown RBP20.26■□□□□ 0.83
SHMT2-202ENST00000414700 ZNF530Q6P9A1 599 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-202ENST00000414700 FNBP4Q8N3X1 1017 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-202ENST00000414700 PKD1L3Q7Z443 1732 aa20.25■□□□□ 0.83
SHMT2-202ENST00000414700 OVOS2A0A0G2JMS6 1433 aa20.25■□□□□ 0.83
SHMT2-202ENST00000414700 AMOTQ4VCS5 1084 aa20.25■□□□□ 0.83
SHMT2-202ENST00000414700 MEX3CQ5U5Q3 659 aaKnown RBP20.25■□□□□ 0.83
SHMT2-202ENST00000414700 UNC5CLQ8IV45 518 aa20.25■□□□□ 0.83
SHMT2-202ENST00000414700 VIRMAQ69YN4 1812 aaKnown RBP20.25■□□□□ 0.83
SHMT2-202ENST00000414700 MAP3K5Q99683 1374 aa20.25■□□□□ 0.83
SHMT2-202ENST00000414700 GNAT3A8MTJ3 354 aa20.24■□□□□ 0.83
SHMT2-202ENST00000414700 IL2RBP14784 551 aa20.24■□□□□ 0.83
SHMT2-202ENST00000414700 TRMT2AQ8IZ69 625 aaKnown RBP20.24■□□□□ 0.83
SHMT2-202ENST00000414700 LMOD3Q0VAK6 560 aa20.24■□□□□ 0.83
SHMT2-202ENST00000414700 FBXO41Q8TF61 875 aa20.24■□□□□ 0.83
SHMT2-202ENST00000414700 E9PSI1 815 aa20.23■□□□□ 0.83
SHMT2-202ENST00000414700 SPATA31A1Q5TZJ5 1347 aa20.23■□□□□ 0.83
SHMT2-202ENST00000414700 SHANK3Q9BYB0 1731 aa20.23■□□□□ 0.83
SHMT2-202ENST00000414700 IL17REQ8NFR9 667 aa20.22■□□□□ 0.83
SHMT2-202ENST00000414700 TSR2Q969E8 191 aaKnown RBP20.22■□□□□ 0.83
SHMT2-202ENST00000414700 WNK3Q9BYP7 1800 aa20.22■□□□□ 0.83
SHMT2-202ENST00000414700 RTF1Q92541 710 aaKnown RBP20.22■□□□□ 0.83
SHMT2-202ENST00000414700 USP21Q9UK80 565 aa20.22■□□□□ 0.83
SHMT2-202ENST00000414700 SPATA31A5Q5VU36 1347 aa20.21■□□□□ 0.83
SHMT2-202ENST00000414700 SPATA31A7Q8IWB4 1347 aa20.21■□□□□ 0.83
SHMT2-202ENST00000414700 CYP27B1O15528 508 aa20.21■□□□□ 0.83
SHMT2-202ENST00000414700 LGR6Q9HBX8 967 aa20.21■□□□□ 0.83
SHMT2-202ENST00000414700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.21■□□□□ 0.83
SHMT2-202ENST00000414700 CCDC9Q9Y3X0 531 aaKnown RBP20.21■□□□□ 0.83
SHMT2-202ENST00000414700 DISP2A7MBM2 1401 aa20.21■□□□□ 0.83
SHMT2-202ENST00000414700 AKAP4Q5JQC9 854 aa20.2■□□□□ 0.83
SHMT2-202ENST00000414700 MPRIPQ6WCQ1 1025 aa20.2■□□□□ 0.83
SHMT2-202ENST00000414700 SPG7Q9UQ90 795 aa20.2■□□□□ 0.83
SHMT2-202ENST00000414700 LAS1LQ9Y4W2 734 aaKnown RBP20.2■□□□□ 0.83
SHMT2-202ENST00000414700 AFF2P51816 1311 aa20.2■□□□□ 0.82
SHMT2-202ENST00000414700 C1orf141Q5JVX7 400 aa20.2■□□□□ 0.82
SHMT2-202ENST00000414700 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.2■□□□□ 0.82
SHMT2-202ENST00000414700 LRRC37A3O60309 1634 aa20.2■□□□□ 0.82
SHMT2-202ENST00000414700 MSH5O43196 834 aa20.19■□□□□ 0.82
SHMT2-202ENST00000414700 IL16Q14005 1332 aa20.19■□□□□ 0.82
SHMT2-202ENST00000414700 FANCIQ9NVI1 1328 aa20.19■□□□□ 0.82
SHMT2-202ENST00000414700 PHKG2P15735 406 aa20.19■□□□□ 0.82
SHMT2-202ENST00000414700 ZCRB1Q8TBF4 217 aaKnown RBP20.19■□□□□ 0.82
SHMT2-202ENST00000414700 HTATSF1O43719 755 aaKnown RBP20.18■□□□□ 0.82
SHMT2-202ENST00000414700 PLEKHG2Q9H7P9 1386 aa20.18■□□□□ 0.82
SHMT2-202ENST00000414700 VPS72Q15906 364 aa20.17■□□□□ 0.82
SHMT2-202ENST00000414700 CEMIPQ8WUJ3 1361 aa20.17■□□□□ 0.82
SHMT2-202ENST00000414700 ZNF853P0CG23 659 aa20.17■□□□□ 0.82
SHMT2-202ENST00000414700 MIS18AQ9NYP9 233 aa20.17■□□□□ 0.82
SHMT2-202ENST00000414700 KDM6AO15550 1401 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-202ENST00000414700 IFNL2Q8IZJ0 200 aa20.16■□□□□ 0.82
SHMT2-202ENST00000414700 CFAP44Q96MT7 982 aa20.16■□□□□ 0.82
SHMT2-202ENST00000414700 MYH16Q9H6N6 1097 aa20.16■□□□□ 0.82
SHMT2-202ENST00000414700 DDX54Q8TDD1 881 aaKnown RBP20.15■□□□□ 0.82
SHMT2-202ENST00000414700 MBIPQ9NS73 344 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 IFT57Q9NWB7 429 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 SCN11AQ9UI33 1791 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 ADAMTS7Q9UKP4 1686 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 CALD1Q05682 793 aaKnown RBP20.15■□□□□ 0.82
SHMT2-202ENST00000414700 THRAP3Q9Y2W1 955 aaKnown RBP20.15■□□□□ 0.82
SHMT2-202ENST00000414700 PCDH11XQ9BZA7 1347 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 PCDH11YQ9BZA8 1340 aa20.15■□□□□ 0.82
SHMT2-202ENST00000414700 RNMTO43148 476 aaKnown RBP20.14■□□□□ 0.81
SHMT2-202ENST00000414700 GNAI1P63096 354 aa20.14■□□□□ 0.81
SHMT2-202ENST00000414700 FAM98CQ17RN3 349 aaKnown RBP20.14■□□□□ 0.81
SHMT2-202ENST00000414700 CHL1O00533 1208 aa20.12■□□□□ 0.81
SHMT2-202ENST00000414700 GLI3P10071 1580 aa20.12■□□□□ 0.81
SHMT2-202ENST00000414700 EXOSC9Q06265 439 aaKnown RBP20.12■□□□□ 0.81
SHMT2-202ENST00000414700 BARGINQ6ZT62 677 aa20.12■□□□□ 0.81
SHMT2-202ENST00000414700 SIPA1L3O60292 1781 aaPredicted RBP20.11■□□□□ 0.81
SHMT2-202ENST00000414700 KAT6BQ8WYB5 2073 aa20.1■□□□□ 0.81
SHMT2-202ENST00000414700 EP400Q96L91 3159 aa20.1■□□□□ 0.81
SHMT2-202ENST00000414700 TNS2Q63HR2 1409 aa20.1■□□□□ 0.81
SHMT2-202ENST00000414700 EXOC5O00471 708 aa20.1■□□□□ 0.81
SHMT2-202ENST00000414700 KRT24Q2M2I5 525 aa20.1■□□□□ 0.81
SHMT2-202ENST00000414700 ATRNO75882 1429 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 TEFQ10587 303 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 DCAF5Q96JK2 942 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 GJD4Q96KN9 370 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-202ENST00000414700 TSPYL4Q9UJ04 414 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 RCAN3Q9UKA8 241 aa20.09■□□□□ 0.81
SHMT2-202ENST00000414700 TAF7Q15545 349 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms