RNA–Protein interactions for RNA: ENST00000413731.1

UPF3AP1-201, Transcript of UPF3A pseudogene 1, humanhuman

BASIC

Gene UPF3AP1, Length 1,126 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP1-201ENST00000413731 RNF25Q96BH1 459 aaPredicted RBP11.84□□□□□ -0.51
UPF3AP1-201ENST00000413731 QSER1Q2KHR3 1735 aa11.83□□□□□ -0.52
UPF3AP1-201ENST00000413731 CDCA7Q9BWT1 371 aaPredicted RBP11.83□□□□□ -0.52
UPF3AP1-201ENST00000413731 TTC21BQ7Z4L5 1316 aa11.83□□□□□ -0.52
UPF3AP1-201ENST00000413731 EVC2Q86UK5 1308 aa11.83□□□□□ -0.52
UPF3AP1-201ENST00000413731 RIOK3O14730 519 aaKnown RBP11.82□□□□□ -0.52
UPF3AP1-201ENST00000413731 CSB-PGBD3P0DP91 1061 aa11.82□□□□□ -0.52
UPF3AP1-201ENST00000413731 TXNRD1Q16881 649 aa11.82□□□□□ -0.52
UPF3AP1-201ENST00000413731 CCDC7Q96M83 1385 aa11.81□□□□□ -0.52
UPF3AP1-201ENST00000413731 CARD10Q9BWT7 1032 aa11.81□□□□□ -0.52
UPF3AP1-201ENST00000413731 STK32BQ9NY57 414 aa11.81□□□□□ -0.52
UPF3AP1-201ENST00000413731 TTC21AQ8NDW8 1320 aa11.81□□□□□ -0.52
UPF3AP1-201ENST00000413731 COL24A1Q17RW2 1714 aa11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 DOT1LQ8TEK3 1739 aa11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 KCNH5Q8NCM2 988 aa11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 PCGF6Q9BYE7 350 aa11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 FAM208AQ9UK61 1670 aaKnown RBP11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 SHANK3Q9BYB0 1731 aa11.8□□□□□ -0.52
UPF3AP1-201ENST00000413731 ROCK2O75116 1388 aaKnown RBP11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 CD163L1Q9NR16 1453 aa11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 STK25O00506 426 aa11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 NKX1-1Q15270 411 aaPredicted RBP11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 SLC15A2Q16348 729 aa11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 FHDC1Q9C0D6 1143 aaPredicted RBP11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 RGPD2P0DJD1 1756 aa11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 KTN1Q86UP2 1357 aaKnown RBP11.79□□□□□ -0.52
UPF3AP1-201ENST00000413731 UTRNP46939 3433 aa11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 ZNF784Q8NCA9 323 aaPredicted RBP11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 L3MBTL2Q969R5 705 aa11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 ACSBG1Q96GR2 724 aa11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 SGIP1Q9BQI5 828 aa11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 ERBB3P21860 1342 aa11.78□□□□□ -0.52
UPF3AP1-201ENST00000413731 EXOC5O00471 708 aa11.77□□□□□ -0.53
UPF3AP1-201ENST00000413731 SYT17Q9BSW7 474 aa11.77□□□□□ -0.53
UPF3AP1-201ENST00000413731 MTFR1LQ9H019 292 aa11.77□□□□□ -0.53
UPF3AP1-201ENST00000413731 LY75O60449 1722 aa11.77□□□□□ -0.53
UPF3AP1-201ENST00000413731 GTPBP6O43824 516 aaPredicted RBP11.76□□□□□ -0.53
UPF3AP1-201ENST00000413731 ZNF827Q17R98 1081 aa11.76□□□□□ -0.53
UPF3AP1-201ENST00000413731 USP31Q70CQ4 1352 aa11.76□□□□□ -0.53
UPF3AP1-201ENST00000413731 SBNO2Q9Y2G9 1366 aa11.76□□□□□ -0.53
UPF3AP1-201ENST00000413731 TULP1O00294 542 aaPredicted RBP11.75□□□□□ -0.53
UPF3AP1-201ENST00000413731 NUBP1P53384 320 aa11.75□□□□□ -0.53
UPF3AP1-201ENST00000413731 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.75□□□□□ -0.53
UPF3AP1-201ENST00000413731 MAP3K5Q99683 1374 aa11.75□□□□□ -0.53
UPF3AP1-201ENST00000413731 NEUROD1Q13562 356 aa11.74□□□□□ -0.53
UPF3AP1-201ENST00000413731 NME9Q86XW9 330 aa11.74□□□□□ -0.53
UPF3AP1-201ENST00000413731 NLRP2Q9NX02 1062 aa11.74□□□□□ -0.53
UPF3AP1-201ENST00000413731 IL2RBP14784 551 aa11.73□□□□□ -0.53
UPF3AP1-201ENST00000413731 SIN3AQ96ST3 1273 aa11.73□□□□□ -0.53
UPF3AP1-201ENST00000413731 TIMELESSQ9UNS1 1208 aa11.73□□□□□ -0.53
UPF3AP1-201ENST00000413731 EDC4Q6P2E9 1401 aaKnown RBP11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 ANKRD24Q8TF21 1146 aa11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 FAM212AQ96EL1 285 aa11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 ARXQ96QS3 562 aa11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 LRRC4BQ9NT99 713 aa11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 GTF3C3Q9Y5Q9 886 aa11.72□□□□□ -0.53
UPF3AP1-201ENST00000413731 A0A1W2PP64 1363 aa11.71□□□□□ -0.53
UPF3AP1-201ENST00000413731 TONSLQ96HA7 1378 aa11.7□□□□□ -0.54
UPF3AP1-201ENST00000413731 SENP3-EIF4A1A0A087X0R7 540 aa11.7□□□□□ -0.54
UPF3AP1-201ENST00000413731 TAF1LQ8IZX4 1826 aa11.7□□□□□ -0.54
UPF3AP1-201ENST00000413731 NSD2O96028 1365 aa11.69□□□□□ -0.54
UPF3AP1-201ENST00000413731 C5P01031 1676 aa11.69□□□□□ -0.54
UPF3AP1-201ENST00000413731 PNPLA7Q6ZV29 1317 aa11.69□□□□□ -0.54
UPF3AP1-201ENST00000413731 AKT1S1Q96B36 256 aa11.69□□□□□ -0.54
UPF3AP1-201ENST00000413731 MEGF6O75095 1541 aa11.69□□□□□ -0.54
UPF3AP1-201ENST00000413731 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
UPF3AP1-201ENST00000413731 STK24Q9Y6E0 443 aa11.68□□□□□ -0.54
UPF3AP1-201ENST00000413731 KCNQ4P56696 695 aa11.67□□□□□ -0.54
UPF3AP1-201ENST00000413731 C1QTNF8P60827 252 aa11.67□□□□□ -0.54
UPF3AP1-201ENST00000413731 SLC12A5Q9H2X9 1139 aa11.67□□□□□ -0.54
UPF3AP1-201ENST00000413731 RYDENQ9NUL5 291 aaKnown RBP11.67□□□□□ -0.54
UPF3AP1-201ENST00000413731 TOGARAM1Q9Y4F4 1720 aa11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 KIF20BQ96Q89 1820 aa11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 GPR162Q16538 588 aa11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 HDGFL2Q7Z4V5 671 aaPredicted RBP11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 LTV1Q96GA3 475 aaPredicted RBP11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 ANKRD36BQ8N2N9 1353 aa11.66□□□□□ -0.54
UPF3AP1-201ENST00000413731 ITGB4P16144 1822 aa11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 GOLGB1Q14789 3259 aaKnown RBP11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 SLC27A3Q5K4L6 730 aa11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 NLGN2Q8NFZ4 835 aa11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 DDX54Q8TDD1 881 aaKnown RBP11.65□□□□□ -0.54
UPF3AP1-201ENST00000413731 POLD1P28340 1107 aa11.64□□□□□ -0.55
UPF3AP1-201ENST00000413731 IP6K1Q92551 441 aa11.64□□□□□ -0.55
UPF3AP1-201ENST00000413731 SYTL4Q96C24 671 aaPredicted RBP11.64□□□□□ -0.55
UPF3AP1-201ENST00000413731 CARD11Q9BXL7 1154 aa11.64□□□□□ -0.55
UPF3AP1-201ENST00000413731 MAP3K19Q56UN5 1328 aa11.63□□□□□ -0.55
UPF3AP1-201ENST00000413731 SLC16A10Q8TF71 515 aa11.63□□□□□ -0.55
UPF3AP1-201ENST00000413731 UBR3Q6ZT12 1888 aa11.63□□□□□ -0.55
UPF3AP1-201ENST00000413731 GIGYF1O75420 1035 aaPredicted RBP11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 HOXC9P31274 260 aa11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 PRIM1P49642 420 aaKnown RBP11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 ERICH6Q7L0X2 663 aa11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 SPDYE1Q8NFV5 336 aaPredicted RBP11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 CCER1Q8TC90 406 aaPredicted RBP11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 TERF2IPQ9NYB0 399 aa11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 TFCP2L1Q9NZI6 479 aa11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 PKD1L3Q7Z443 1732 aa11.62□□□□□ -0.55
UPF3AP1-201ENST00000413731 C4BP0C0L5 1744 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms