RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 PPM1GO15355 546 aaPredicted RBP8.67□□□□□ -1.02
USP54-202ENST00000413442 HSP90AB1P08238 724 aaKnown RBP8.67□□□□□ -1.02
USP54-202ENST00000413442 EN1Q05925 392 aaPredicted RBP8.67□□□□□ -1.02
USP54-202ENST00000413442 NCAPD2Q15021 1401 aa8.67□□□□□ -1.02
USP54-202ENST00000413442 NKX1-1Q15270 411 aaPredicted RBP8.67□□□□□ -1.02
USP54-202ENST00000413442 FAM182BQ5T319 152 aa8.67□□□□□ -1.02
USP54-202ENST00000413442 PCDH11XQ9BZA7 1347 aa8.67□□□□□ -1.02
USP54-202ENST00000413442 PCDH11YQ9BZA8 1340 aa8.67□□□□□ -1.02
USP54-202ENST00000413442 EP400Q96L91 3159 aa8.66□□□□□ -1.02
USP54-202ENST00000413442 FBLN1P23142 703 aa8.66□□□□□ -1.02
USP54-202ENST00000413442 SLC27A3Q5K4L6 730 aa8.66□□□□□ -1.02
USP54-202ENST00000413442 EMILIN1Q9Y6C2 1016 aa8.66□□□□□ -1.02
USP54-202ENST00000413442 EZH2Q15910 746 aaKnown RBP8.65□□□□□ -1.02
USP54-202ENST00000413442 PLEKHO1Q53GL0 409 aaPredicted RBP8.65□□□□□ -1.02
USP54-202ENST00000413442 IFNL2Q8IZJ0 200 aa8.65□□□□□ -1.02
USP54-202ENST00000413442 DDX54Q8TDD1 881 aaKnown RBP8.65□□□□□ -1.02
USP54-202ENST00000413442 EYA1Q99502 592 aa8.65□□□□□ -1.02
USP54-202ENST00000413442 RGPD2P0DJD1 1756 aa8.65□□□□□ -1.02
USP54-202ENST00000413442 IGSF1Q8N6C5 1336 aa8.64□□□□□ -1.03
USP54-202ENST00000413442 EIF4A2Q14240 407 aaKnown RBP8.64□□□□□ -1.03
USP54-202ENST00000413442 SMARCC1Q92922 1105 aaPredicted RBP8.64□□□□□ -1.03
USP54-202ENST00000413442 NHSQ6T4R5 1651 aa8.64□□□□□ -1.03
USP54-202ENST00000413442 RREB1Q92766 1687 aa8.63□□□□□ -1.03
USP54-202ENST00000413442 MTHFSP49914 203 aa8.63□□□□□ -1.03
USP54-202ENST00000413442 CFAP53Q96M91 514 aa8.63□□□□□ -1.03
USP54-202ENST00000413442 NUDCQ9Y266 331 aa8.63□□□□□ -1.03
USP54-202ENST00000413442 ERVV-2B6SEH9 535 aa8.62□□□□□ -1.03
USP54-202ENST00000413442 DIAPH1O60610 1272 aaKnown RBP8.62□□□□□ -1.03
USP54-202ENST00000413442 TNNT2P45379 298 aaPredicted RBP8.62□□□□□ -1.03
USP54-202ENST00000413442 TXNRD1Q16881 649 aa8.62□□□□□ -1.03
USP54-202ENST00000413442 SLC16A10Q8TF71 515 aa8.62□□□□□ -1.03
USP54-202ENST00000413442 PKD1L3Q7Z443 1732 aa8.62□□□□□ -1.03
USP54-202ENST00000413442 KDRP35968 1356 aa8.61□□□□□ -1.03
USP54-202ENST00000413442 IL13P35225 146 aa8.61□□□□□ -1.03
USP54-202ENST00000413442 PRIM1P49642 420 aaKnown RBP8.61□□□□□ -1.03
USP54-202ENST00000413442 DCAF5Q96JK2 942 aa8.61□□□□□ -1.03
USP54-202ENST00000413442 PNNQ9H307 717 aaKnown RBP8.61□□□□□ -1.03
USP54-202ENST00000413442 STK32BQ9NY57 414 aa8.61□□□□□ -1.03
USP54-202ENST00000413442 MEGF6O75095 1541 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 BTAF1O14981 1849 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 CYP27B1O15528 508 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 KCNQ2O43526 872 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 SLC15A2Q16348 729 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 PROM2Q8N271 834 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 FLAD1Q8NFF5 587 aa8.6□□□□□ -1.03
USP54-202ENST00000413442 PHKG2P15735 406 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 RALBP1Q15311 655 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 C1orf141Q5JVX7 400 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 CC2D1BQ5T0F9 858 aaKnown RBP8.59□□□□□ -1.03
USP54-202ENST00000413442 ACSBG1Q96GR2 724 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 SPON1Q9HCB6 807 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 NUP188Q5SRE5 1749 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 SHANK3Q9BYB0 1731 aa8.59□□□□□ -1.03
USP54-202ENST00000413442 LY75O60449 1722 aa8.58□□□□□ -1.04
USP54-202ENST00000413442 R3HDM1Q15032 1099 aaKnown RBP8.58□□□□□ -1.04
USP54-202ENST00000413442 AKAP4Q5JQC9 854 aa8.58□□□□□ -1.04
USP54-202ENST00000413442 SULT6B1Q6IMI4 303 aa8.58□□□□□ -1.04
USP54-202ENST00000413442 USHBP1Q8N6Y0 703 aa8.58□□□□□ -1.04
USP54-202ENST00000413442 SYTL4Q96C24 671 aaPredicted RBP8.58□□□□□ -1.04
USP54-202ENST00000413442 LRP5O75197 1615 aa8.58□□□□□ -1.04
USP54-202ENST00000413442 ITGB4P16144 1822 aa8.57□□□□□ -1.04
USP54-202ENST00000413442 ZNF831Q5JPB2 1677 aa8.57□□□□□ -1.04
USP54-202ENST00000413442 FCHSD2O94868 740 aa8.57□□□□□ -1.04
USP54-202ENST00000413442 TMOD3Q9NYL9 352 aa8.57□□□□□ -1.04
USP54-202ENST00000413442 QSER1Q2KHR3 1735 aa8.57□□□□□ -1.04
USP54-202ENST00000413442 NEFMP07197 916 aa8.56□□□□□ -1.04
USP54-202ENST00000413442 MPRIPQ6WCQ1 1025 aa8.56□□□□□ -1.04
USP54-202ENST00000413442 GAS2L2Q8NHY3 880 aa8.56□□□□□ -1.04
USP54-202ENST00000413442 DOT1LQ8TEK3 1739 aa8.56□□□□□ -1.04
USP54-202ENST00000413442 HTATSF1O43719 755 aaKnown RBP8.55□□□□□ -1.04
USP54-202ENST00000413442 PPP2R1AP30153 589 aa8.55□□□□□ -1.04
USP54-202ENST00000413442 ZNF530Q6P9A1 599 aaPredicted RBP8.55□□□□□ -1.04
USP54-202ENST00000413442 PTF1AQ7RTS3 328 aa8.55□□□□□ -1.04
USP54-202ENST00000413442 PIGBQ92521 554 aa8.55□□□□□ -1.04
USP54-202ENST00000413442 AKT1S1Q96B36 256 aa8.55□□□□□ -1.04
USP54-202ENST00000413442 MTFR1LQ9H019 292 aa8.55□□□□□ -1.04
USP54-202ENST00000413442 CCNL1Q9UK58 526 aaPredicted RBP8.55□□□□□ -1.04
USP54-202ENST00000413442 PSDA5PKW4 1024 aaPredicted RBP8.54□□□□□ -1.04
USP54-202ENST00000413442 DCAF8L1A6NGE4 600 aa8.54□□□□□ -1.04
USP54-202ENST00000413442 CABP4P57796 275 aa8.54□□□□□ -1.04
USP54-202ENST00000413442 RC3H1Q5TC82 1133 aaKnown RBP8.54□□□□□ -1.04
USP54-202ENST00000413442 VSIG10Q8N0Z9 540 aa8.53□□□□□ -1.04
USP54-202ENST00000413442 TEX13AQ9BXU3 409 aaPredicted RBP8.53□□□□□ -1.04
USP54-202ENST00000413442 LRRC4BQ9NT99 713 aa8.53□□□□□ -1.04
USP54-202ENST00000413442 TFCP2L1Q9NZI6 479 aa8.53□□□□□ -1.04
USP54-202ENST00000413442 SCN11AQ9UI33 1791 aa8.53□□□□□ -1.04
USP54-202ENST00000413442 PALLDQ8WX93 1383 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 LOC102724428A0A0B4J2F2 783 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 GNAT3A8MTJ3 354 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 U2SURPO15042 1029 aaKnown RBP8.52□□□□□ -1.05
USP54-202ENST00000413442 SIK1P57059 783 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 ATG3Q9NT62 314 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 TAF1LQ8IZX4 1826 aa8.52□□□□□ -1.05
USP54-202ENST00000413442 PAPPAQ13219 1627 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 SSFA2P28290 1259 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 POLD1P28340 1107 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 ATP6V1AP38606 617 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 MTHFSDQ2M296 383 aaKnown RBP8.51□□□□□ -1.05
USP54-202ENST00000413442 AEBP1Q8IUX7 1158 aa8.51□□□□□ -1.05
USP54-202ENST00000413442 NFATC2IPQ8NCF5 419 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms