RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 KIF13AQ9H1H9 1805 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 TNNT3P45378 269 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-211ENST00000413186 KCNJ4P48050 445 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 DDB1Q16531 1140 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 ALDH1L2Q3SY69 923 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 BTG4Q9NY30 223 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 IL13P35225 146 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 NRXN1Q9ULB1 1477 aa10.56□□□□□ -0.72
SYNE1-211ENST00000413186 ATF7IPQ6VMQ6 1270 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 KIF24Q5T7B8 1368 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 KIAA1210Q9ULL0 1709 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 A0A0U1RQG5 324 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-211ENST00000413186 MCCP23508 829 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 AEBP1Q8IUX7 1158 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 DIP2AQ14689 1571 aa10.55□□□□□ -0.72
SYNE1-211ENST00000413186 DDX17Q92841 729 aaKnown RBP10.55□□□□□ -0.72
SYNE1-211ENST00000413186 NOP58Q9Y2X3 529 aaKnown RBP10.55□□□□□ -0.72
SYNE1-211ENST00000413186 TULP4Q9NRJ4 1543 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 SRCIN1Q9C0H9 1055 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 TSHZ2Q9NRE2 1034 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 FANCIQ9NVI1 1328 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 INSRP06213 1382 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 NKTRP30414 1462 aaKnown RBP10.54□□□□□ -0.72
SYNE1-211ENST00000413186 TMEM131LA2VDJ0 1609 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 G3BP1Q13283 466 aaKnown RBP eCLIP10.54□□□□□ -0.72
SYNE1-211ENST00000413186 NOB1Q9ULX3 412 aaKnown RBP10.54□□□□□ -0.72
SYNE1-211ENST00000413186 PTCD1O75127 700 aaKnown RBP10.54□□□□□ -0.72
SYNE1-211ENST00000413186 KIAA1211Q6ZU35 1233 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 PANK1Q8TE04 598 aa10.54□□□□□ -0.72
SYNE1-211ENST00000413186 NCBP3Q53F19 620 aaKnown RBP10.53□□□□□ -0.72
SYNE1-211ENST00000413186 G3V3G9 751 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 DCAF8Q5TAQ9 597 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 BRINP3Q76B58 766 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 DCAF5Q96JK2 942 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 RSPH6AQ9H0K4 717 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 TECPR2O15040 1411 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 RTL1A6NKG5 1358 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 PCDH11XQ9BZA7 1347 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 PCDH11YQ9BZA8 1340 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 KDM4FA0A1W2PPD8 638 aa10.53□□□□□ -0.72
SYNE1-211ENST00000413186 SMARCC1Q92922 1105 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-211ENST00000413186 DBF4Q9UBU7 674 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-211ENST00000413186 MTHFSDQ2M296 383 aaKnown RBP10.52□□□□□ -0.72
SYNE1-211ENST00000413186 MIS18AQ9NYP9 233 aa10.52□□□□□ -0.72
SYNE1-211ENST00000413186 MAP3K5Q99683 1374 aa10.52□□□□□ -0.72
SYNE1-211ENST00000413186 NCOA3Q9Y6Q9 1424 aa10.52□□□□□ -0.73
SYNE1-211ENST00000413186 ANKRD45Q5TZF3 282 aa10.52□□□□□ -0.73
SYNE1-211ENST00000413186 BCAR3O75815 825 aa10.52□□□□□ -0.73
SYNE1-211ENST00000413186 MYL6BP14649 208 aa10.52□□□□□ -0.73
SYNE1-211ENST00000413186 HYPKQ9NX55 129 aa10.52□□□□□ -0.73
SYNE1-211ENST00000413186 LRRFIP1Q32MZ4 808 aaKnown RBP10.51□□□□□ -0.73
SYNE1-211ENST00000413186 ARHGEF25Q86VW2 580 aa10.51□□□□□ -0.73
SYNE1-211ENST00000413186 BABAM1Q9NWV8 329 aa10.51□□□□□ -0.73
SYNE1-211ENST00000413186 SLIT1O75093 1534 aa10.51□□□□□ -0.73
SYNE1-211ENST00000413186 GNAI2P04899 355 aa10.51□□□□□ -0.73
SYNE1-211ENST00000413186 SNRPA1P09661 255 aaKnown RBP10.51□□□□□ -0.73
SYNE1-211ENST00000413186 ZNF652Q9Y2D9 606 aa10.51□□□□□ -0.73
SYNE1-211ENST00000413186 FRAT2O75474 233 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-211ENST00000413186 LARP1Q6PKG0 1096 aaKnown RBP10.51□□□□□ -0.73
SYNE1-211ENST00000413186 SOS1Q07889 1333 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-211ENST00000413186 SPATA31A3Q5VYP0 1347 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 QRICH2Q9H0J4 1663 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 RARSP54136 660 aaKnown RBP10.5□□□□□ -0.73
SYNE1-211ENST00000413186 FAM83GA6ND36 823 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 TRIM6-TRIM34B2RNG4 842 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 MBIPQ9NS73 344 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 BCORL1Q5H9F3 1711 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 ARHGAP23Q9P227 1491 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 HSP90AB3PQ58FF7 597 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 MROH2AA6NES4 1674 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 FGD1P98174 961 aa10.5□□□□□ -0.73
SYNE1-211ENST00000413186 SSH1Q8WYL5 1049 aa10.49□□□□□ -0.73
SYNE1-211ENST00000413186 IFIT2P09913 472 aaKnown RBP10.49□□□□□ -0.73
SYNE1-211ENST00000413186 MVPQ14764 893 aaKnown RBP10.49□□□□□ -0.73
SYNE1-211ENST00000413186 PHACTR3Q96KR7 559 aa10.49□□□□□ -0.73
SYNE1-211ENST00000413186 PTPRCP08575 1304 aa10.49□□□□□ -0.73
SYNE1-211ENST00000413186 CDC42BPGQ6DT37 1551 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 C1orf167Q5SNV9 1468 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 NBPF6Q5VWK0 638 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 NBPF4Q96M43 638 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 PPLO60437 1756 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 GOLGA6L22H0YM25 854 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 USP21Q9UK80 565 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 KIAA0232Q92628 1395 aa10.48□□□□□ -0.73
SYNE1-211ENST00000413186 RNMTO43148 476 aaKnown RBP10.47□□□□□ -0.73
SYNE1-211ENST00000413186 ERC1Q8IUD2 1116 aa10.47□□□□□ -0.73
SYNE1-211ENST00000413186 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.47□□□□□ -0.73
SYNE1-211ENST00000413186 A0A087WZG4 1122 aa10.47□□□□□ -0.73
SYNE1-211ENST00000413186 ADGRB1O14514 1584 aa10.47□□□□□ -0.73
SYNE1-211ENST00000413186 NBR1Q14596 966 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 CERKQ8TCT0 537 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 USP31Q70CQ4 1352 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 ZPR1O75312 459 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 GCC1Q96CN9 775 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 CARD10Q9BWT7 1032 aa10.46□□□□□ -0.73
SYNE1-211ENST00000413186 TNS3Q68CZ2 1445 aa10.46□□□□□ -0.74
SYNE1-211ENST00000413186 ERC2O15083 957 aa10.46□□□□□ -0.74
SYNE1-211ENST00000413186 RPAP2Q8IXW5 612 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-211ENST00000413186 CLASRPQ8N2M8 674 aaKnown RBP10.46□□□□□ -0.74
SYNE1-211ENST00000413186 DCCP43146 1447 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms