RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SYCP2Q9BX26 1530 aa8.85□□□□□ -0.99
SCN9A-202ENST00000409435 RBM19Q9Y4C8 960 aaKnown RBP8.84□□□□□ -0.99
SCN9A-202ENST00000409435 PCDH11XQ9BZA7 1347 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 PCDH11YQ9BZA8 1340 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 CCDC125Q86Z20 511 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 MPHOSPH6Q99547 160 aaKnown RBP8.84□□□□□ -0.99
SCN9A-202ENST00000409435 RFX1P22670 979 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 ATF7IPQ6VMQ6 1270 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 LARGE2Q8N3Y3 721 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 DUOX2Q9NRD8 1548 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 NME9Q86XW9 330 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 CCDC34Q96HJ3 373 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 H7C1D1 291 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 OTUD7BQ6GQQ9 843 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 NIM1KQ8IY84 436 aa8.84□□□□□ -0.99
SCN9A-202ENST00000409435 API5Q9BZZ5 524 aaKnown RBP8.84□□□□□ -0.99
SCN9A-202ENST00000409435 R3HDM1Q15032 1099 aaKnown RBP8.83□□□□□ -1
SCN9A-202ENST00000409435 FEZ1Q99689 392 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 CCDC66A2RUB6 948 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 GCP02774 474 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 TNNI2P48788 182 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 RAI14Q9P0K7 980 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 UBTFL1P0CB47 393 aaPredicted RBP8.83□□□□□ -1
SCN9A-202ENST00000409435 YY1P25490 414 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 CNBD1Q8NA66 436 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 SYAP1Q96A49 352 aaPredicted RBP8.83□□□□□ -1
SCN9A-202ENST00000409435 PATL2C9JE40 543 aaKnown RBP8.83□□□□□ -1
SCN9A-202ENST00000409435 GPTP24298 496 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 SIRT1Q96EB6 747 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 MAP3K9P80192 1104 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 ZC3H12CQ9C0D7 883 aaKnown RBP8.83□□□□□ -1
SCN9A-202ENST00000409435 TMEM2Q9UHN6 1383 aa8.83□□□□□ -1
SCN9A-202ENST00000409435 TRPM2O94759 1503 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 GPATCH8Q9UKJ3 1502 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 RUNDC1Q96C34 613 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 CCDC85AQ96PX6 553 aaPredicted RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 MAP7D2Q96T17 732 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 CAPN15O75808 1086 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 PDE4CQ08493 712 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 NFXL1Q6ZNB6 911 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 VEZTQ9HBM0 779 aa8.82□□□□□ -1
SCN9A-202ENST00000409435 ECM2O94769 699 aaPredicted RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 IFIT1P09914 478 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 MTERF4Q7Z6M4 381 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 CPLX2Q6PUV4 134 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 DZIP1Q86YF9 867 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 NIP7Q9Y221 180 aaKnown RBP eCLIP8.82□□□□□ -1
SCN9A-202ENST00000409435 SUPT16HQ9Y5B9 1047 aaKnown RBP8.82□□□□□ -1
SCN9A-202ENST00000409435 MIER1Q8N108 512 aa8.81□□□□□ -1
SCN9A-202ENST00000409435 CHMP4CQ96CF2 233 aa8.81□□□□□ -1
SCN9A-202ENST00000409435 ADGRF5Q8IZF2 1346 aa8.81□□□□□ -1
SCN9A-202ENST00000409435 RDXP35241 583 aaKnown RBP8.81□□□□□ -1
SCN9A-202ENST00000409435 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.81□□□□□ -1
SCN9A-202ENST00000409435 EN1Q05925 392 aaPredicted RBP8.81□□□□□ -1
SCN9A-202ENST00000409435 C14orf93Q9H972 538 aaKnown RBP8.81□□□□□ -1
SCN9A-202ENST00000409435 UGGT1Q9NYU2 1555 aa8.81□□□□□ -1
SCN9A-202ENST00000409435 BIVM-ERCC5R4GMW8 1640 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 ZBTB7AO95365 584 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 DCPSQ96C86 337 aaKnown RBP8.8□□□□□ -1
SCN9A-202ENST00000409435 FAM83GA6ND36 823 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 TPM4P67936 248 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 NLGN1Q8N2Q7 840 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 RWDD1Q9H446 243 aaPredicted RBP8.8□□□□□ -1
SCN9A-202ENST00000409435 CWC15Q9P013 229 aaKnown RBP8.8□□□□□ -1
SCN9A-202ENST00000409435 CA8P35219 290 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 HOOK2Q96ED9 719 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 CABP5Q9NP86 173 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 LRP2BPQ9P2M1 347 aa8.8□□□□□ -1
SCN9A-202ENST00000409435 ALDH1B1P30837 517 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 DIAPH3Q9NSV4 1193 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 TTC21BQ7Z4L5 1316 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 PRIM1P49642 420 aaKnown RBP8.79□□□□□ -1
SCN9A-202ENST00000409435 CCDC152Q4G0S7 254 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 SCAF11Q99590 1463 aaKnown RBP8.79□□□□□ -1
SCN9A-202ENST00000409435 USP5P45974 858 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 NBPF1Q3BBV0 1214 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 GJD4Q96KN9 370 aaPredicted RBP8.79□□□□□ -1
SCN9A-202ENST00000409435 ZNF287Q9HBT7 754 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 PRKAG2Q9UGJ0 569 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 NCOA1Q15788 1441 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 MFAP1P55081 439 aaKnown RBP8.79□□□□□ -1
SCN9A-202ENST00000409435 METTL24Q5JXM2 366 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 CCDC191Q8NCU4 936 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 CLUAP1Q96AJ1 413 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 ZNF428Q96B54 188 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 KDM2BQ8NHM5 1336 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 ANKRD18BA2A2Z9 1011 aa8.79□□□□□ -1
SCN9A-202ENST00000409435 DALRD3Q5D0E6 543 aaKnown RBP8.79□□□□□ -1
SCN9A-202ENST00000409435 POLR3DP05423 398 aaPredicted RBP8.78□□□□□ -1
SCN9A-202ENST00000409435 DZIP3Q86Y13 1208 aaKnown RBP8.78□□□□□ -1
SCN9A-202ENST00000409435 NACAP1Q9BZK3 213 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 CEP126Q9P2H0 1117 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 LRRFIP2Q9Y608 721 aaKnown RBP8.78□□□□□ -1
SCN9A-202ENST00000409435 MYBBP1AQ9BQG0 1328 aaKnown RBP8.78□□□□□ -1
SCN9A-202ENST00000409435 NUP153P49790 1475 aaKnown RBP8.78□□□□□ -1
SCN9A-202ENST00000409435 C2CD5Q86YS7 1000 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 RILPL2Q969X0 211 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 ZBTB3Q9H5J0 574 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 ABCF2Q9UG63 623 aa8.78□□□□□ -1
SCN9A-202ENST00000409435 GIGYF1O75420 1035 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 175.6 ms