RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 RALBP1Q15311 655 aa26.74■■□□□ 1.87
PDLIM2-207ENST00000409417 CFAP53Q96M91 514 aa26.74■■□□□ 1.87
PDLIM2-207ENST00000409417 COL3A1P02461 1466 aaPredicted RBP26.72■■□□□ 1.87
PDLIM2-207ENST00000409417 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.72■■□□□ 1.87
PDLIM2-207ENST00000409417 PLEKHG2Q9H7P9 1386 aa26.72■■□□□ 1.87
PDLIM2-207ENST00000409417 AEBP1Q8IUX7 1158 aa26.71■■□□□ 1.87
PDLIM2-207ENST00000409417 KDRP35968 1356 aa26.71■■□□□ 1.87
PDLIM2-207ENST00000409417 SULT6B1Q6IMI4 303 aa26.7■■□□□ 1.87
PDLIM2-207ENST00000409417 PCDH11XQ9BZA7 1347 aa26.7■■□□□ 1.86
PDLIM2-207ENST00000409417 PCDH11YQ9BZA8 1340 aa26.7■■□□□ 1.86
PDLIM2-207ENST00000409417 SPG7Q9UQ90 795 aa26.69■■□□□ 1.86
PDLIM2-207ENST00000409417 RGPD1P0DJD0 1748 aa26.69■■□□□ 1.86
PDLIM2-207ENST00000409417 BCL11BQ9C0K0 894 aaPredicted RBP26.68■■□□□ 1.86
PDLIM2-207ENST00000409417 BAG6P46379 1132 aa26.68■■□□□ 1.86
PDLIM2-207ENST00000409417 DEFB132Q7Z7B7 95 aa26.67■■□□□ 1.86
PDLIM2-207ENST00000409417 CYP27B1O15528 508 aa26.66■■□□□ 1.86
PDLIM2-207ENST00000409417 APBA3O96018 575 aa26.65■■□□□ 1.86
PDLIM2-207ENST00000409417 SHANK3Q9BYB0 1731 aa26.65■■□□□ 1.86
PDLIM2-207ENST00000409417 U2SURPO15042 1029 aaKnown RBP26.64■■□□□ 1.86
PDLIM2-207ENST00000409417 PKD1L3Q7Z443 1732 aa26.64■■□□□ 1.85
PDLIM2-207ENST00000409417 HMOX1P09601 288 aa26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 AMOTQ4VCS5 1084 aa26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 PLEKHO1Q53GL0 409 aaPredicted RBP26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 PTF1AQ7RTS3 328 aa26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 NUDCQ9Y266 331 aa26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 SBF2Q86WG5 1849 aa26.63■■□□□ 1.85
PDLIM2-207ENST00000409417 KCNQ2O43526 872 aa26.62■■□□□ 1.85
PDLIM2-207ENST00000409417 ACSBG1Q96GR2 724 aa26.62■■□□□ 1.85
PDLIM2-207ENST00000409417 TNS1Q9HBL0 1735 aaKnown RBP26.62■■□□□ 1.85
PDLIM2-207ENST00000409417 EN1Q05925 392 aaPredicted RBP26.62■■□□□ 1.85
PDLIM2-207ENST00000409417 PRKRIP1Q9H875 184 aaPredicted RBP26.62■■□□□ 1.85
PDLIM2-207ENST00000409417 MYBBP1AQ9BQG0 1328 aaKnown RBP26.61■■□□□ 1.85
PDLIM2-207ENST00000409417 NKX1-1Q15270 411 aaPredicted RBP26.6■■□□□ 1.85
PDLIM2-207ENST00000409417 IFNL2Q8IZJ0 200 aa26.59■■□□□ 1.85
PDLIM2-207ENST00000409417 PHKG2P15735 406 aa26.58■■□□□ 1.85
PDLIM2-207ENST00000409417 CAMKK2Q96RR4 588 aa26.58■■□□□ 1.85
PDLIM2-207ENST00000409417 PRIM1P49642 420 aaKnown RBP26.57■■□□□ 1.84
PDLIM2-207ENST00000409417 KAT6BQ8WYB5 2073 aa26.57■■□□□ 1.84
PDLIM2-207ENST00000409417 PLSCR1O15162 318 aa26.56■■□□□ 1.84
PDLIM2-207ENST00000409417 ZNF530Q6P9A1 599 aaPredicted RBP26.56■■□□□ 1.84
PDLIM2-207ENST00000409417 NHSQ6T4R5 1651 aa26.56■■□□□ 1.84
PDLIM2-207ENST00000409417 U2AF1L5P0DN76 240 aaPredicted RBP26.55■■□□□ 1.84
PDLIM2-207ENST00000409417 U2AF1Q01081 240 aaKnown RBP eCLIP26.55■■□□□ 1.84
PDLIM2-207ENST00000409417 SYTL4Q96C24 671 aaPredicted RBP26.55■■□□□ 1.84
PDLIM2-207ENST00000409417 EZH2Q15910 746 aaKnown RBP26.55■■□□□ 1.84
PDLIM2-207ENST00000409417 HSP90AB1P08238 724 aaKnown RBP26.53■■□□□ 1.84
PDLIM2-207ENST00000409417 FCHSD2O94868 740 aa26.52■■□□□ 1.84
PDLIM2-207ENST00000409417 C1orf141Q5JVX7 400 aa26.51■■□□□ 1.83
PDLIM2-207ENST00000409417 RSPH6AQ9H0K4 717 aa26.51■■□□□ 1.83
PDLIM2-207ENST00000409417 DCAF5Q96JK2 942 aa26.5■■□□□ 1.83
PDLIM2-207ENST00000409417 DOT1LQ8TEK3 1739 aa26.5■■□□□ 1.83
PDLIM2-207ENST00000409417 PRKAR2BP31323 418 aa26.49■■□□□ 1.83
PDLIM2-207ENST00000409417 MTHFSDQ2M296 383 aaKnown RBP26.49■■□□□ 1.83
PDLIM2-207ENST00000409417 AKAP4Q5JQC9 854 aa26.47■■□□□ 1.83
PDLIM2-207ENST00000409417 MPRIPQ6WCQ1 1025 aa26.47■■□□□ 1.83
PDLIM2-207ENST00000409417 BTAF1O14981 1849 aa26.46■■□□□ 1.83
PDLIM2-207ENST00000409417 PROM2Q8N271 834 aa26.46■■□□□ 1.83
PDLIM2-207ENST00000409417 RGPD3A6NKT7 1758 aaPredicted RBP26.46■■□□□ 1.83
PDLIM2-207ENST00000409417 RGPD4Q7Z3J3 1758 aa26.46■■□□□ 1.83
PDLIM2-207ENST00000409417 ERVV-2B6SEH9 535 aa26.45■■□□□ 1.82
PDLIM2-207ENST00000409417 PHACTR3Q96KR7 559 aa26.45■■□□□ 1.82
PDLIM2-207ENST00000409417 ANP32CO43423 234 aa26.44■■□□□ 1.82
PDLIM2-207ENST00000409417 GAS2L2Q8NHY3 880 aa26.44■■□□□ 1.82
PDLIM2-207ENST00000409417 PIGBQ92521 554 aa26.44■■□□□ 1.82
PDLIM2-207ENST00000409417 TXNRD1Q16881 649 aa26.43■■□□□ 1.82
PDLIM2-207ENST00000409417 TMOD3Q9NYL9 352 aa26.43■■□□□ 1.82
PDLIM2-207ENST00000409417 TOGARAM1Q9Y4F4 1720 aa26.43■■□□□ 1.82
PDLIM2-207ENST00000409417 KDM6AO15550 1401 aaPredicted RBP26.43■■□□□ 1.82
PDLIM2-207ENST00000409417 PNNQ9H307 717 aaKnown RBP26.4■■□□□ 1.82
PDLIM2-207ENST00000409417 RREB1Q92766 1687 aa26.39■■□□□ 1.82
PDLIM2-207ENST00000409417 CABP4P57796 275 aa26.38■■□□□ 1.81
PDLIM2-207ENST00000409417 SMARCC1Q92922 1105 aaPredicted RBP26.38■■□□□ 1.81
PDLIM2-207ENST00000409417 PLEKHF1Q96S99 279 aa26.38■■□□□ 1.81
PDLIM2-207ENST00000409417 ITGB4P16144 1822 aa26.38■■□□□ 1.81
PDLIM2-207ENST00000409417 GNAT3A8MTJ3 354 aa26.37■■□□□ 1.81
PDLIM2-207ENST00000409417 NEFMP07197 916 aa26.37■■□□□ 1.81
PDLIM2-207ENST00000409417 SLC27A3Q5K4L6 730 aa26.37■■□□□ 1.81
PDLIM2-207ENST00000409417 LGR6Q9HBX8 967 aa26.37■■□□□ 1.81
PDLIM2-207ENST00000409417 MAP3K5Q99683 1374 aa26.37■■□□□ 1.81
PDLIM2-207ENST00000409417 RNMTO43148 476 aaKnown RBP26.36■■□□□ 1.81
PDLIM2-207ENST00000409417 NBPF14Q5TI25 921 aa26.36■■□□□ 1.81
PDLIM2-207ENST00000409417 WDR43Q15061 677 aaKnown RBP eCLIP26.36■■□□□ 1.81
PDLIM2-207ENST00000409417 PALLDQ8WX93 1383 aa26.35■■□□□ 1.81
PDLIM2-207ENST00000409417 NFATC2IPQ8NCF5 419 aa26.35■■□□□ 1.81
PDLIM2-207ENST00000409417 LRRC4BQ9NT99 713 aa26.35■■□□□ 1.81
PDLIM2-207ENST00000409417 ASAP1Q9ULH1 1129 aa26.34■■□□□ 1.81
PDLIM2-207ENST00000409417 NUP188Q5SRE5 1749 aa26.34■■□□□ 1.81
PDLIM2-207ENST00000409417 SLC52A2Q9HAB3 445 aa26.33■■□□□ 1.81
PDLIM2-207ENST00000409417 ATG3Q9NT62 314 aa26.32■■□□□ 1.8
PDLIM2-207ENST00000409417 CCNL1Q9UK58 526 aaPredicted RBP26.32■■□□□ 1.8
PDLIM2-207ENST00000409417 SCN11AQ9UI33 1791 aa26.31■■□□□ 1.8
PDLIM2-207ENST00000409417 IL17REQ8NFR9 667 aa26.31■■□□□ 1.8
PDLIM2-207ENST00000409417 MAPK8IP3Q9UPT6 1336 aa26.31■■□□□ 1.8
PDLIM2-207ENST00000409417 ADAMTS8Q9UP79 889 aa26.3■■□□□ 1.8
PDLIM2-207ENST00000409417 R3HDM1Q15032 1099 aaKnown RBP26.3■■□□□ 1.8
PDLIM2-207ENST00000409417 CCDC184Q52MB2 194 aa26.3■■□□□ 1.8
PDLIM2-207ENST00000409417 ANO8Q9HCE9 1232 aaPredicted RBP26.3■■□□□ 1.8
PDLIM2-207ENST00000409417 ADAMTS7Q9UKP4 1686 aa26.29■■□□□ 1.8
PDLIM2-207ENST00000409417 LY75O60449 1722 aa26.29■■□□□ 1.8
PDLIM2-207ENST00000409417 HTATSF1O43719 755 aaKnown RBP26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms