RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 NCOA3Q9Y6Q9 1424 aa31.37■■■□□ 2.61
DNMT3A-206ENST00000406659 ANP32AP39687 249 aaKnown RBP31.37■■■□□ 2.61
DNMT3A-206ENST00000406659 KIAA0232Q92628 1395 aa31.37■■■□□ 2.61
DNMT3A-206ENST00000406659 GCP02774 474 aa31.36■■■□□ 2.61
DNMT3A-206ENST00000406659 STRCP1A6NGW2 1772 aa31.35■■■□□ 2.61
DNMT3A-206ENST00000406659 TRPM3Q9HCF6 1732 aaPredicted RBP31.34■■■□□ 2.61
DNMT3A-206ENST00000406659 GNAT3A8MTJ3 354 aa31.34■■■□□ 2.61
DNMT3A-206ENST00000406659 DCCP43146 1447 aa31.33■■■□□ 2.61
DNMT3A-206ENST00000406659 SLIT3O75094 1523 aa31.33■■■□□ 2.61
DNMT3A-206ENST00000406659 MSH5O43196 834 aa31.33■■■□□ 2.61
DNMT3A-206ENST00000406659 USHBP1Q8N6Y0 703 aa31.33■■■□□ 2.61
DNMT3A-206ENST00000406659 ZBTB40Q9NUA8 1239 aa31.33■■■□□ 2.61
DNMT3A-206ENST00000406659 PHRF1Q9P1Y6 1649 aaKnown RBP31.32■■■□□ 2.6
DNMT3A-206ENST00000406659 PLEKHG5O94827 1062 aa31.32■■■□□ 2.6
DNMT3A-206ENST00000406659 API5Q9BZZ5 524 aaKnown RBP31.32■■■□□ 2.6
DNMT3A-206ENST00000406659 CHMP4BQ9H444 224 aaKnown RBP31.32■■■□□ 2.6
DNMT3A-206ENST00000406659 TSPYL4Q9UJ04 414 aa31.32■■■□□ 2.6
DNMT3A-206ENST00000406659 MST1RQ04912 1400 aa31.31■■■□□ 2.6
DNMT3A-206ENST00000406659 USP19O94966 1318 aa31.31■■■□□ 2.6
DNMT3A-206ENST00000406659 ARHGEF25Q86VW2 580 aa31.31■■■□□ 2.6
DNMT3A-206ENST00000406659 KRT24Q2M2I5 525 aa31.3■■■□□ 2.6
DNMT3A-206ENST00000406659 FAM161AQ3B820 660 aa31.3■■■□□ 2.6
DNMT3A-206ENST00000406659 MAP3K5Q99683 1374 aa31.29■■■□□ 2.6
DNMT3A-206ENST00000406659 NBPF6Q5VWK0 638 aa31.29■■■□□ 2.6
DNMT3A-206ENST00000406659 NBPF4Q96M43 638 aa31.29■■■□□ 2.6
DNMT3A-206ENST00000406659 MIS18AQ9NYP9 233 aa31.29■■■□□ 2.6
DNMT3A-206ENST00000406659 HDAC1Q13547 482 aaPredicted RBP31.28■■■□□ 2.6
DNMT3A-206ENST00000406659 CADPS2Q86UW7 1296 aa31.28■■■□□ 2.6
DNMT3A-206ENST00000406659 ABCC4O15439 1325 aa31.27■■■□□ 2.6
DNMT3A-206ENST00000406659 PDZRN3Q9UPQ7 1066 aa31.26■■■□□ 2.59
DNMT3A-206ENST00000406659 MSH6P52701 1360 aa31.25■■■□□ 2.59
DNMT3A-206ENST00000406659 NPM2Q86SE8 214 aaKnown RBP31.24■■■□□ 2.59
DNMT3A-206ENST00000406659 ZBTB7BO15156 539 aaPredicted RBP31.22■■■□□ 2.59
DNMT3A-206ENST00000406659 LRRC37A3O60309 1634 aa31.22■■■□□ 2.59
DNMT3A-206ENST00000406659 KDM4FA0A1W2PPD8 638 aa31.22■■■□□ 2.59
DNMT3A-206ENST00000406659 IL17REQ8NFR9 667 aa31.22■■■□□ 2.59
DNMT3A-206ENST00000406659 C8orf34Q49A92 452 aa31.21■■■□□ 2.59
DNMT3A-206ENST00000406659 LRRC59Q96AG4 307 aaKnown RBP31.21■■■□□ 2.59
DNMT3A-206ENST00000406659 ALS2Q96Q42 1657 aa31.2■■■□□ 2.58
DNMT3A-206ENST00000406659 ANKRD24Q8TF21 1146 aa31.2■■■□□ 2.58
DNMT3A-206ENST00000406659 IPO9Q96P70 1041 aaKnown RBP31.2■■■□□ 2.58
DNMT3A-206ENST00000406659 TAF7Q15545 349 aaPredicted RBP31.19■■■□□ 2.58
DNMT3A-206ENST00000406659 BABAM1Q9NWV8 329 aa31.19■■■□□ 2.58
DNMT3A-206ENST00000406659 NPHP3Q7Z494 1330 aa31.19■■■□□ 2.58
DNMT3A-206ENST00000406659 RGPD2P0DJD1 1756 aa31.18■■■□□ 2.58
DNMT3A-206ENST00000406659 ERICH6Q7L0X2 663 aa31.17■■■□□ 2.58
DNMT3A-206ENST00000406659 DDX17Q92841 729 aaKnown RBP31.17■■■□□ 2.58
DNMT3A-206ENST00000406659 PTPRCP08575 1304 aa31.17■■■□□ 2.58
DNMT3A-206ENST00000406659 LMTK3Q96Q04 1460 aa31.16■■■□□ 2.58
DNMT3A-206ENST00000406659 PLEKHO1Q53GL0 409 aaPredicted RBP31.16■■■□□ 2.58
DNMT3A-206ENST00000406659 SLC4A2P04920 1241 aa31.15■■■□□ 2.58
DNMT3A-206ENST00000406659 ZC3H6P61129 1189 aaKnown RBP31.14■■■□□ 2.58
DNMT3A-206ENST00000406659 SMC5Q8IY18 1101 aa31.14■■■□□ 2.58
DNMT3A-206ENST00000406659 AXIN2Q9Y2T1 843 aa31.13■■■□□ 2.57
DNMT3A-206ENST00000406659 AMOTQ4VCS5 1084 aa31.12■■■□□ 2.57
DNMT3A-206ENST00000406659 INTS3Q68E01 1043 aaKnown RBP31.12■■■□□ 2.57
DNMT3A-206ENST00000406659 MED1Q15648 1581 aaPredicted RBP31.12■■■□□ 2.57
DNMT3A-206ENST00000406659 NCAPD2Q15021 1401 aa31.11■■■□□ 2.57
DNMT3A-206ENST00000406659 STRCQ7RTU9 1775 aa31.11■■■□□ 2.57
DNMT3A-206ENST00000406659 ZNF530Q6P9A1 599 aaPredicted RBP31.11■■■□□ 2.57
DNMT3A-206ENST00000406659 SOS1Q07889 1333 aaPredicted RBP31.1■■■□□ 2.57
DNMT3A-206ENST00000406659 AKAP4Q5JQC9 854 aa31.1■■■□□ 2.57
DNMT3A-206ENST00000406659 STK31Q9BXU1 1019 aa31.1■■■□□ 2.57
DNMT3A-206ENST00000406659 CEMIPQ8WUJ3 1361 aa31.09■■■□□ 2.57
DNMT3A-206ENST00000406659 NOP58Q9Y2X3 529 aaKnown RBP31.09■■■□□ 2.57
DNMT3A-206ENST00000406659 CCDC30Q5VVM6 783 aa31.08■■■□□ 2.57
DNMT3A-206ENST00000406659 C1orf115Q9H7X2 142 aa31.08■■■□□ 2.57
DNMT3A-206ENST00000406659 RGS12O14924 1447 aa31.08■■■□□ 2.57
DNMT3A-206ENST00000406659 TNS3Q68CZ2 1445 aa31.08■■■□□ 2.57
DNMT3A-206ENST00000406659 XIRP1Q702N8 1843 aaKnown RBP31.08■■■□□ 2.57
DNMT3A-206ENST00000406659 C1orf141Q5JVX7 400 aa31.06■■■□□ 2.56
DNMT3A-206ENST00000406659 ANP32EQ9BTT0 268 aa31.06■■■□□ 2.56
DNMT3A-206ENST00000406659 LGR6Q9HBX8 967 aa31.06■■■□□ 2.56
DNMT3A-206ENST00000406659 ZBTB47Q9UFB7 747 aaPredicted RBP31.06■■■□□ 2.56
DNMT3A-206ENST00000406659 RGPD5Q99666 1765 aa31.05■■■□□ 2.56
DNMT3A-206ENST00000406659 LMO7Q8WWI1 1683 aa31.05■■■□□ 2.56
DNMT3A-206ENST00000406659 CAMTA1Q9Y6Y1 1673 aa31.05■■■□□ 2.56
DNMT3A-206ENST00000406659 ERBB3P21860 1342 aa31.04■■■□□ 2.56
DNMT3A-206ENST00000406659 SPATA31A3Q5VYP0 1347 aa31.04■■■□□ 2.56
DNMT3A-206ENST00000406659 PXDNQ92626 1479 aa31.04■■■□□ 2.56
DNMT3A-206ENST00000406659 NUCB1Q02818 461 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 G2E3Q7L622 706 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 GCC1Q96CN9 775 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 VIRMAQ69YN4 1812 aaKnown RBP31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 TEFQ10587 303 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 BRINP3Q76B58 766 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 CABLES1Q8TDN4 633 aa31.02■■■□□ 2.56
DNMT3A-206ENST00000406659 ZNF335Q9H4Z2 1342 aaPredicted RBP31.01■■■□□ 2.55
DNMT3A-206ENST00000406659 MPRIPQ6WCQ1 1025 aa31■■■□□ 2.55
DNMT3A-206ENST00000406659 DDRGK1Q96HY6 314 aa31■■■□□ 2.55
DNMT3A-206ENST00000406659 RNMTO43148 476 aaKnown RBP30.99■■■□□ 2.55
DNMT3A-206ENST00000406659 SIRT2Q8IXJ6 389 aa30.99■■■□□ 2.55
DNMT3A-206ENST00000406659 NLRP2Q9NX02 1062 aa30.99■■■□□ 2.55
DNMT3A-206ENST00000406659 NECTIN2Q92692 538 aa30.98■■■□□ 2.55
DNMT3A-206ENST00000406659 CHD1LQ86WJ1 897 aa30.97■■■□□ 2.55
DNMT3A-206ENST00000406659 CCT4P50991 539 aaKnown RBP30.97■■■□□ 2.55
DNMT3A-206ENST00000406659 RAPGEF4Q8WZA2 1011 aa30.96■■■□□ 2.55
DNMT3A-206ENST00000406659 SLAIN2Q9P270 581 aa30.96■■■□□ 2.55
DNMT3A-206ENST00000406659 FAM208AQ9UK61 1670 aaKnown RBP30.96■■■□□ 2.55
DNMT3A-206ENST00000406659 BTBD11A6QL63 1104 aa30.95■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms