RNA–Protein interactions for RNA: ENST00000399644.5

CACNA1C-218, Transcript of calcium voltage-gated channel subunit alpha1 C, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1C, Length 6,511 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-218	ENST00000399644	RAPGEF2	Q9Y4G8	1499 aa		13.06	□□□□□ -0.32
CACNA1C-218	ENST00000399644	TNIP1	Q15025	636 aa		13.06	□□□□□ -0.32
CACNA1C-218	ENST00000399644	IL27	Q8NEV9	243 aa		13.06	□□□□□ -0.32
CACNA1C-218	ENST00000399644	ARHGAP5	Q13017	1502 aa		13.06	□□□□□ -0.32
CACNA1C-218	ENST00000399644	FER	P16591	822 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	NACAP1	Q9BZK3	213 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	JAKMIP3	Q5VZ66	844 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	GSTTP1	A0A1W2PQM5	241 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	USP5	P45974	858 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	C6orf229	H3BNL8	230 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	TMCO3	Q6UWJ1	677 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	KIAA1328	Q86T90	577 aa		13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	EPB41L2	O43491	1005 aa	Known RBP	13.05	□□□□□ -0.32
CACNA1C-218	ENST00000399644	CCDC30	Q5VVM6	783 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	RGS22	Q8NE09	1264 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	FSD1	Q9BTV5	496 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	TPD52	P55327	224 aa	Predicted RBP	13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	ZKSCAN2	Q63HK3	967 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	MPRIP	Q6WCQ1	1025 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	FEZ1	Q99689	392 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	TXLNA	P40222	546 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	NASP	P49321	788 aa	Predicted RBP	13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	ST5	P78524	1137 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	RAB3IL1	Q8TBN0	382 aa		13.04	□□□□□ -0.32
CACNA1C-218	ENST00000399644	ANKRD18B	A2A2Z9	1011 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	ERCC3	P19447	782 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	GNAI1	P63096	354 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	FANCI	Q9NVI1	1328 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	MPHOSPH6	Q99547	160 aa	Known RBP	13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	RAPGEF3	O95398	923 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	CCDC96	Q2M329	555 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	CAVIN1	Q6NZI2	390 aa	Known RBP	13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	NAA25	Q14CX7	972 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	GPR162	Q16538	588 aa		13.03	□□□□□ -0.32
CACNA1C-218	ENST00000399644	IFFO1	Q0D2I5	559 aa		13.02	□□□□□ -0.32
CACNA1C-218	ENST00000399644	NUP133	Q8WUM0	1156 aa		13.02	□□□□□ -0.32
CACNA1C-218	ENST00000399644	PRAM1	Q96QH2	718 aa		13.02	□□□□□ -0.32
CACNA1C-218	ENST00000399644	OTUD6B	Q8N6M0	293 aa		13.02	□□□□□ -0.32
CACNA1C-218	ENST00000399644	SEPT10	Q9P0V9	454 aa		13.02	□□□□□ -0.32
CACNA1C-218	ENST00000399644	UBE2Q2	Q8WVN8	375 aa		13.02	□□□□□ -0.33
CACNA1C-218	ENST00000399644	SSX2IP	Q9Y2D8	614 aa		13.02	□□□□□ -0.33
CACNA1C-218	ENST00000399644	POLR3D	P05423	398 aa	Predicted RBP	13.02	□□□□□ -0.33
CACNA1C-218	ENST00000399644	LRP2BP	Q9P2M1	347 aa		13.02	□□□□□ -0.33
CACNA1C-218	ENST00000399644	ERLIN1	O75477	346 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	USP8	P40818	1118 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	RPUSD2	Q8IZ73	545 aa	Known RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	MAP4K4	O95819	1239 aa	Predicted RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	MXRA7	P84157	204 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	AFAP1	Q8N556	730 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PPP1R12A	O14974	1030 aa	Predicted RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	TAF4B	Q92750	862 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PTCD1	O75127	700 aa	Known RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PAIP2	Q9BPZ3	127 aa	Known RBP	13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	LMAN1	P49257	510 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	ZNF408	Q9H9D4	720 aa		13.01	□□□□□ -0.33
CACNA1C-218	ENST00000399644	SHTN1	A0MZ66	631 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	UBA5	Q9GZZ9	404 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	POLR3G	O15318	223 aa	Predicted RBP	13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CAVIN4	Q5BKX8	364 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	TSPY26P	Q9H489	355 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	UQCRHL	A0A096LP55	91 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	UQCRH	P07919	91 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	L3MBTL2	Q969R5	705 aa		13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	LRPPRC	P42704	1394 aa	Known RBP	13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	DHX8	Q14562	1220 aa	Known RBP	13	□□□□□ -0.33
CACNA1C-218	ENST00000399644	NOP2	P46087	812 aa	Known RBP	12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	SATB1	Q01826	763 aa		12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	FAM107B	Q9H098	131 aa		12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	LARP1	Q6PKG0	1096 aa	Known RBP	12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CDK19	Q9BWU1	502 aa		12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CTNNA2	P26232	953 aa		12.99	□□□□□ -0.33
CACNA1C-218	ENST00000399644	KIN	O60870	393 aa	Known RBP	12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	KANK4	Q5T7N3	995 aa	Predicted RBP	12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	FERMT2	Q96AC1	680 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	ABCF2	Q9UG63	623 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	NINL	Q9Y2I6	1382 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PDE1C	Q14123	709 aa	Predicted RBP	12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	TFCP2L1	Q9NZI6	479 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	HDAC9	Q9UKV0	1011 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PHLDB1	Q86UU1	1377 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	EP400NL	Q6ZTU2	488 aa		12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PNISR	Q8TF01	805 aa	Known RBP	12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PRG4	Q92954	1404 aa	Predicted RBP	12.98	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CCDC69	A6NI79	296 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	TDO2	P48775	406 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	WHAMM	Q8TF30	809 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	COG6	Q9Y2V7	657 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	GAPVD1	Q14C86	1478 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	SIL1	Q9H173	461 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	STK32B	Q9NY57	414 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CCDC88B	A6NC98	1476 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	CCP110	O43303	1012 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	ZSCAN25	Q6NSZ9	544 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	GTPBP4	Q9BZE4	634 aa	Known RBP	12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	LMTK3	Q96Q04	1460 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	RBM26	Q5T8P6	1007 aa	Known RBP	12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	PPP1R14C	Q8TAE6	165 aa		12.97	□□□□□ -0.33
CACNA1C-218	ENST00000399644	BTBD11	A6QL63	1104 aa		12.97	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms