RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 HSP90AB4PQ58FF6 505 aa11.26□□□□□ -0.61
SMAD9-203ENST00000399275 SMARCE1Q969G3 411 aa11.26□□□□□ -0.61
SMAD9-203ENST00000399275 RARSP54136 660 aaKnown RBP11.26□□□□□ -0.61
SMAD9-203ENST00000399275 CLNS1AP54105 237 aaKnown RBP11.25□□□□□ -0.61
SMAD9-203ENST00000399275 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.25□□□□□ -0.61
SMAD9-203ENST00000399275 KIF5BP33176 963 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 IQCEQ6IPM2 695 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 GPRASP1Q5JY77 1395 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 PDCP20941 246 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 HSP90AB2PQ58FF8 381 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 FYB1O15117 783 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 RBBP5Q15291 538 aaKnown RBP11.25□□□□□ -0.61
SMAD9-203ENST00000399275 JAKMIP3Q5VZ66 844 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 OLFM4Q6UX06 510 aa11.25□□□□□ -0.61
SMAD9-203ENST00000399275 SYCE3A1L190 88 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 CCDC97Q96F63 343 aaPredicted RBP11.24□□□□□ -0.61
SMAD9-203ENST00000399275 COG3Q96JB2 828 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 SOX12O15370 315 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 TROQ12816 1431 aaPredicted RBP11.24□□□□□ -0.61
SMAD9-203ENST00000399275 CCDC160A6NGH7 325 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 CCDC175P0C221 793 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 CCDC181Q5TID7 509 aa11.24□□□□□ -0.61
SMAD9-203ENST00000399275 EPRSP07814 1512 aaKnown RBP11.24□□□□□ -0.61
SMAD9-203ENST00000399275 PSMA5P28066 241 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 FEZ1Q99689 392 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 ZFYP08048 801 aaPredicted RBP11.23□□□□□ -0.61
SMAD9-203ENST00000399275 SDF4Q9BRK5 362 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 PLPPR3Q6T4P5 718 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 PLEKHH1Q9ULM0 1364 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 GCKP35557 465 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 OGFRQ9NZT2 677 aa11.23□□□□□ -0.61
SMAD9-203ENST00000399275 IGHDP01880 384 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.22□□□□□ -0.61
SMAD9-203ENST00000399275 CUL7Q14999 1698 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 OFD1O75665 1012 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 SNX21Q969T3 373 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 CCDC47Q96A33 483 aaKnown RBP11.22□□□□□ -0.61
SMAD9-203ENST00000399275 LRRFIP2Q9Y608 721 aaKnown RBP11.22□□□□□ -0.61
SMAD9-203ENST00000399275 ABCC5O15440 1437 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 KIF4AO95239 1232 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 MCM3P25205 808 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 SSFA2P28290 1259 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 UVSSAQ2YD98 709 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 CNTROBQ8N137 903 aa11.22□□□□□ -0.61
SMAD9-203ENST00000399275 TSR2Q969E8 191 aaKnown RBP11.22□□□□□ -0.61
SMAD9-203ENST00000399275 RALGAPBQ86X10 1494 aa11.21□□□□□ -0.61
SMAD9-203ENST00000399275 ABCA10Q8WWZ4 1543 aa11.21□□□□□ -0.61
SMAD9-203ENST00000399275 RPUSD2Q8IZ73 545 aaKnown RBP11.21□□□□□ -0.61
SMAD9-203ENST00000399275 RRAGDQ9NQL2 400 aaPredicted RBP11.21□□□□□ -0.61
SMAD9-203ENST00000399275 PARD3Q8TEW0 1356 aa11.21□□□□□ -0.61
SMAD9-203ENST00000399275 PTPRGP23470 1445 aa11.21□□□□□ -0.61
SMAD9-203ENST00000399275 PANK2Q9BZ23 570 aa11.21□□□□□ -0.61
SMAD9-203ENST00000399275 SPATS2LQ9NUQ6 558 aaKnown RBP11.21□□□□□ -0.61
SMAD9-203ENST00000399275 IFIT2P09913 472 aaKnown RBP11.21□□□□□ -0.62
SMAD9-203ENST00000399275 CAPN2P17655 700 aa11.21□□□□□ -0.62
SMAD9-203ENST00000399275 SH3BGRP55822 239 aaPredicted RBP11.21□□□□□ -0.62
SMAD9-203ENST00000399275 FIBPO43427 364 aa11.21□□□□□ -0.62
SMAD9-203ENST00000399275 BAG4O95429 457 aaKnown RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 SRRTQ9BXP5 876 aaKnown RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 GNAI3P08754 354 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 SPECC1LQ69YQ0 1117 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 SCLT1Q96NL6 688 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 CDK13Q14004 1512 aaKnown RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 EBAG9O00559 213 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 TERF1P54274 439 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 CCDC183Q5T5S1 534 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 FMNL2Q96PY5 1086 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 FEZ2Q9UHY8 353 aaPredicted RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 THOC2Q8NI27 1593 aaKnown RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 SMC1AQ14683 1233 aaKnown RBP11.2□□□□□ -0.62
SMAD9-203ENST00000399275 CCDC27Q2M243 656 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 BMP2KLQ5H9B9 411 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 LMOD2Q6P5Q4 547 aa11.2□□□□□ -0.62
SMAD9-203ENST00000399275 PPP2R5AQ15172 486 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 SYCP1Q15431 976 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 TWISTNBQ3B726 338 aaPredicted RBP11.19□□□□□ -0.62
SMAD9-203ENST00000399275 ALDH1L2Q3SY69 923 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 MSL1Q68DK7 614 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 PPM1EQ8WY54 764 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 URI1O94763 535 aaPredicted RBP11.19□□□□□ -0.62
SMAD9-203ENST00000399275 C1orf115Q9H7X2 142 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 TMEM57Q8N5G2 664 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 OTUD6BQ8N6M0 293 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 TNMDQ9H2S6 317 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 INSRP06213 1382 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 GABPB1Q06547 395 aaPredicted RBP11.19□□□□□ -0.62
SMAD9-203ENST00000399275 FILIP1LQ4L180 1135 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 SRCIN1Q9C0H9 1055 aa11.19□□□□□ -0.62
SMAD9-203ENST00000399275 ABCC11Q96J66 1382 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 RFC1P35251 1148 aaPredicted RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 CCDC6Q16204 474 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 ZSCAN23Q3MJ62 389 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 POTEB2H3BUK9 544 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 KRT85P78386 507 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 ZBTB17Q13105 803 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 LRRFIP1Q32MZ4 808 aaKnown RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 RPAP2Q8IXW5 612 aaPredicted RBP11.18□□□□□ -0.62
SMAD9-203ENST00000399275 CFAP43Q8NDM7 1665 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 ZNF853P0CG23 659 aa11.18□□□□□ -0.62
SMAD9-203ENST00000399275 C16orf45Q96MC5 204 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms